Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02458 and H281DRAFT_02459 overlap by 11 nucleotides H281DRAFT_02459 and H281DRAFT_02460 are separated by 64 nucleotides H281DRAFT_02460 and H281DRAFT_02461 are separated by 93 nucleotides
H281DRAFT_02458: H281DRAFT_02458 - sarcosine oxidase subunit alpha, at 23,440 to 26,442
_02458
H281DRAFT_02459: H281DRAFT_02459 - sarcosine oxidase subunit gamma, at 26,432 to 27,088
_02459
H281DRAFT_02460: H281DRAFT_02460 - hypothetical protein, at 27,153 to 27,416
_02460
H281DRAFT_02461: H281DRAFT_02461 - MFS transporter, putative metabolite:H+ symporter, at 27,510 to 29,027
_02461
Position (kb) 27
28 Strain fitness (log2 ratio) -2
-1
0
1
2 at 26.275 kb on + strand at 26.275 kb on + strand at 26.276 kb on - strand at 26.276 kb on - strand at 26.854 kb on + strand, within H281DRAFT_02459 at 26.855 kb on - strand, within H281DRAFT_02459 at 27.096 kb on - strand at 27.282 kb on + strand, within H281DRAFT_02460 at 27.286 kb on + strand, within H281DRAFT_02460 at 27.287 kb on - strand, within H281DRAFT_02460 at 27.333 kb on + strand, within H281DRAFT_02460 at 27.334 kb on - strand, within H281DRAFT_02460 at 27.415 kb on - strand at 27.516 kb on + strand at 27.525 kb on + strand at 27.526 kb on - strand at 27.538 kb on + strand at 27.539 kb on - strand at 27.551 kb on - strand at 27.925 kb on - strand, within H281DRAFT_02461 at 27.925 kb on - strand, within H281DRAFT_02461 at 27.967 kb on - strand, within H281DRAFT_02461 at 28.120 kb on - strand, within H281DRAFT_02461 at 28.120 kb on - strand, within H281DRAFT_02461 at 28.379 kb on - strand, within H281DRAFT_02461 at 28.392 kb on + strand, within H281DRAFT_02461 at 28.393 kb on - strand, within H281DRAFT_02461
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 26,275 + -0.7 26,275 + -0.4 26,276 - +0.1 26,276 - -0.4 26,854 + H281DRAFT_02459 0.64 -1.0 26,855 - H281DRAFT_02459 0.64 -0.9 27,096 - +2.7 27,282 + H281DRAFT_02460 0.49 -0.3 27,286 + H281DRAFT_02460 0.50 +0.3 27,287 - H281DRAFT_02460 0.51 -0.6 27,333 + H281DRAFT_02460 0.68 +0.0 27,334 - H281DRAFT_02460 0.69 +0.0 27,415 - -2.1 27,516 + -0.4 27,525 + -0.3 27,526 - -0.2 27,538 + +1.5 27,539 - -0.2 27,551 - -0.3 27,925 - H281DRAFT_02461 0.27 -0.3 27,925 - H281DRAFT_02461 0.27 +0.9 27,967 - H281DRAFT_02461 0.30 +0.2 28,120 - H281DRAFT_02461 0.40 +0.4 28,120 - H281DRAFT_02461 0.40 +0.4 28,379 - H281DRAFT_02461 0.57 -2.1 28,392 + H281DRAFT_02461 0.58 +0.5 28,393 - H281DRAFT_02461 0.58 +2.1
Or see this region's nucleotide sequence