Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02249

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02247 and H281DRAFT_02248 overlap by 4 nucleotidesH281DRAFT_02248 and H281DRAFT_02249 are separated by 33 nucleotidesH281DRAFT_02249 and H281DRAFT_02250 are separated by 200 nucleotidesH281DRAFT_02250 and H281DRAFT_02251 are separated by 554 nucleotides H281DRAFT_02247: H281DRAFT_02247 - D-3-phosphoglycerate dehydrogenase, at 395,170 to 396,183 _02247 H281DRAFT_02248: H281DRAFT_02248 - Predicted esterase of the alpha-beta hydrolase superfamily, at 396,180 to 397,043 _02248 H281DRAFT_02249: H281DRAFT_02249 - uncharacterized domain 1-containing protein, at 397,077 to 397,481 _02249 H281DRAFT_02250: H281DRAFT_02250 - tRNA_Lys_CTT, at 397,682 to 397,757 _02250 H281DRAFT_02251: H281DRAFT_02251 - hypothetical protein, at 398,312 to 399,076 _02251 Position (kb) 397 398Strain fitness (log2 ratio) -2 -1 0 1 2 3at 396.077 kb on - strand, within H281DRAFT_02247at 396.077 kb on - strand, within H281DRAFT_02247at 396.085 kb on + strandat 396.085 kb on + strandat 396.086 kb on - strandat 396.181 kb on + strandat 396.250 kb on + strandat 396.250 kb on + strandat 396.250 kb on + strandat 396.250 kb on + strandat 396.250 kb on + strandat 396.250 kb on + strandat 396.250 kb on + strandat 396.250 kb on + strandat 396.251 kb on - strandat 396.251 kb on - strandat 396.251 kb on - strandat 396.280 kb on + strand, within H281DRAFT_02248at 396.281 kb on - strand, within H281DRAFT_02248at 396.322 kb on + strand, within H281DRAFT_02248at 396.322 kb on + strand, within H281DRAFT_02248at 396.323 kb on - strand, within H281DRAFT_02248at 396.374 kb on - strand, within H281DRAFT_02248at 396.396 kb on + strand, within H281DRAFT_02248at 396.396 kb on + strand, within H281DRAFT_02248at 396.397 kb on - strand, within H281DRAFT_02248at 396.397 kb on - strand, within H281DRAFT_02248at 396.397 kb on - strand, within H281DRAFT_02248at 396.397 kb on - strand, within H281DRAFT_02248at 396.605 kb on + strand, within H281DRAFT_02248at 396.605 kb on + strand, within H281DRAFT_02248at 396.605 kb on + strand, within H281DRAFT_02248at 396.606 kb on - strand, within H281DRAFT_02248at 396.606 kb on - strand, within H281DRAFT_02248at 396.606 kb on - strand, within H281DRAFT_02248at 396.643 kb on + strand, within H281DRAFT_02248at 396.643 kb on + strand, within H281DRAFT_02248at 396.643 kb on + strand, within H281DRAFT_02248at 396.644 kb on - strand, within H281DRAFT_02248at 396.644 kb on - strand, within H281DRAFT_02248at 396.754 kb on + strand, within H281DRAFT_02248at 396.754 kb on + strand, within H281DRAFT_02248at 396.754 kb on + strand, within H281DRAFT_02248at 396.754 kb on + strand, within H281DRAFT_02248at 396.755 kb on - strand, within H281DRAFT_02248at 396.755 kb on - strand, within H281DRAFT_02248at 396.755 kb on - strand, within H281DRAFT_02248at 396.778 kb on + strand, within H281DRAFT_02248at 396.779 kb on - strand, within H281DRAFT_02248at 396.779 kb on - strand, within H281DRAFT_02248at 396.779 kb on - strand, within H281DRAFT_02248at 396.829 kb on + strand, within H281DRAFT_02248at 396.830 kb on - strand, within H281DRAFT_02248at 396.830 kb on - strand, within H281DRAFT_02248at 396.852 kb on + strand, within H281DRAFT_02248at 396.865 kb on + strand, within H281DRAFT_02248at 396.865 kb on + strand, within H281DRAFT_02248at 396.866 kb on - strand, within H281DRAFT_02248at 396.866 kb on - strand, within H281DRAFT_02248at 396.898 kb on + strand, within H281DRAFT_02248at 396.899 kb on - strand, within H281DRAFT_02248at 397.057 kb on - strandat 397.057 kb on - strandat 397.079 kb on - strandat 397.094 kb on - strandat 397.094 kb on - strandat 397.094 kb on - strandat 397.094 kb on - strandat 397.213 kb on - strand, within H281DRAFT_02249at 397.613 kb on + strandat 397.614 kb on - strandat 397.773 kb on + strandat 397.773 kb on + strandat 397.818 kb on + strandat 397.818 kb on + strandat 397.818 kb on + strandat 397.818 kb on + strandat 397.819 kb on - strandat 397.819 kb on - strandat 397.819 kb on - strandat 397.819 kb on - strandat 397.830 kb on - strandat 397.830 kb on - strandat 397.838 kb on + strandat 397.838 kb on + strandat 397.839 kb on - strandat 397.839 kb on - strandat 397.839 kb on - strandat 397.858 kb on + strandat 397.858 kb on + strandat 397.858 kb on + strandat 397.859 kb on - strandat 397.859 kb on - strandat 397.859 kb on - strandat 397.867 kb on - strandat 397.999 kb on - strandat 398.001 kb on + strandat 398.001 kb on + strandat 398.001 kb on + strandat 398.001 kb on + strandat 398.001 kb on + strandat 398.002 kb on - strandat 398.002 kb on - strandat 398.002 kb on - strandat 398.002 kb on - strandat 398.002 kb on - strandat 398.002 kb on - strandat 398.002 kb on - strandat 398.166 kb on + strandat 398.166 kb on + strandat 398.166 kb on + strandat 398.167 kb on - strandat 398.167 kb on - strandat 398.167 kb on - strandat 398.210 kb on - strandat 398.271 kb on + strandat 398.424 kb on + strand, within H281DRAFT_02251

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
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396,077 - H281DRAFT_02247 0.89 +0.2
396,077 - H281DRAFT_02247 0.89 +0.3
396,085 + -0.2
396,085 + -0.2
396,086 - +0.6
396,181 + +0.3
396,250 + +0.5
396,250 + +0.6
396,250 + +1.0
396,250 + +0.7
396,250 + +0.4
396,250 + +0.7
396,250 + +0.6
396,250 + +0.5
396,251 - +0.3
396,251 - -1.0
396,251 - +0.3
396,280 + H281DRAFT_02248 0.12 -0.8
396,281 - H281DRAFT_02248 0.12 -0.1
396,322 + H281DRAFT_02248 0.16 -0.1
396,322 + H281DRAFT_02248 0.16 -0.3
396,323 - H281DRAFT_02248 0.17 +1.1
396,374 - H281DRAFT_02248 0.22 -1.4
396,396 + H281DRAFT_02248 0.25 +0.3
396,396 + H281DRAFT_02248 0.25 +0.1
396,397 - H281DRAFT_02248 0.25 -1.0
396,397 - H281DRAFT_02248 0.25 +0.1
396,397 - H281DRAFT_02248 0.25 +0.2
396,397 - H281DRAFT_02248 0.25 +0.1
396,605 + H281DRAFT_02248 0.49 +1.1
396,605 + H281DRAFT_02248 0.49 +0.2
396,605 + H281DRAFT_02248 0.49 -0.4
396,606 - H281DRAFT_02248 0.49 +0.6
396,606 - H281DRAFT_02248 0.49 +0.3
396,606 - H281DRAFT_02248 0.49 +0.6
396,643 + H281DRAFT_02248 0.54 -0.2
396,643 + H281DRAFT_02248 0.54 -0.9
396,643 + H281DRAFT_02248 0.54 -0.7
396,644 - H281DRAFT_02248 0.54 -1.0
396,644 - H281DRAFT_02248 0.54 +1.2
396,754 + H281DRAFT_02248 0.66 +0.1
396,754 + H281DRAFT_02248 0.66 +0.3
396,754 + H281DRAFT_02248 0.66 +0.8
396,754 + H281DRAFT_02248 0.66 -0.8
396,755 - H281DRAFT_02248 0.67 -0.8
396,755 - H281DRAFT_02248 0.67 -0.4
396,755 - H281DRAFT_02248 0.67 +0.0
396,778 + H281DRAFT_02248 0.69 +1.0
396,779 - H281DRAFT_02248 0.69 +0.8
396,779 - H281DRAFT_02248 0.69 -1.1
396,779 - H281DRAFT_02248 0.69 +1.0
396,829 + H281DRAFT_02248 0.75 +0.1
396,830 - H281DRAFT_02248 0.75 -0.5
396,830 - H281DRAFT_02248 0.75 +2.8
396,852 + H281DRAFT_02248 0.78 +1.1
396,865 + H281DRAFT_02248 0.79 -0.1
396,865 + H281DRAFT_02248 0.79 +0.2
396,866 - H281DRAFT_02248 0.79 +0.5
396,866 - H281DRAFT_02248 0.79 -0.6
396,898 + H281DRAFT_02248 0.83 -0.1
396,899 - H281DRAFT_02248 0.83 +1.2
397,057 - +0.6
397,057 - +2.0
397,079 - +0.6
397,094 - +0.4
397,094 - -1.0
397,094 - +0.3
397,094 - -1.4
397,213 - H281DRAFT_02249 0.34 +1.2
397,613 + -0.5
397,614 - +0.5
397,773 + -0.4
397,773 + -0.3
397,818 + -0.6
397,818 + -0.8
397,818 + -0.3
397,818 + -0.3
397,819 - +0.6
397,819 - -0.1
397,819 - +0.2
397,819 - -0.6
397,830 - +0.0
397,830 - +0.4
397,838 + +0.5
397,838 + +0.7
397,839 - -0.7
397,839 - -0.5
397,839 - -1.3
397,858 + +0.9
397,858 + +0.3
397,858 + -0.1
397,859 - -1.2
397,859 - -1.2
397,859 - -0.7
397,867 - +0.7
397,999 - +0.4
398,001 + -0.1
398,001 + -0.2
398,001 + -2.2
398,001 + +0.5
398,001 + -0.4
398,002 - +0.2
398,002 - -0.5
398,002 - +0.2
398,002 - -0.4
398,002 - -0.3
398,002 - +0.0
398,002 - +0.8
398,166 + -0.9
398,166 + -0.5
398,166 + -0.1
398,167 - +0.9
398,167 - +0.2
398,167 - -1.5
398,210 - +0.2
398,271 + +0.2
398,424 + H281DRAFT_02251 0.15 -1.6

Or see this region's nucleotide sequence