Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02146 and H281DRAFT_02147 are separated by 191 nucleotides H281DRAFT_02147 and H281DRAFT_02148 are separated by 63 nucleotides H281DRAFT_02148 and H281DRAFT_02149 overlap by 4 nucleotides
H281DRAFT_02146: H281DRAFT_02146 - Integrase, at 287,791 to 289,005
_02146
H281DRAFT_02147: H281DRAFT_02147 - tRNA_Ala_CGC, at 289,197 to 289,272
_02147
H281DRAFT_02148: H281DRAFT_02148 - cytochrome c, at 289,336 to 289,686
_02148
H281DRAFT_02149: H281DRAFT_02149 - Osmotically-inducible protein OsmY, contains BON domain, at 289,683 to 290,474
_02149
Position (kb) 289
290 Strain fitness (log2 ratio) -2
-1
0
1
2 at 288.217 kb on - strand, within H281DRAFT_02146 at 288.217 kb on - strand, within H281DRAFT_02146 at 288.217 kb on - strand, within H281DRAFT_02146 at 288.217 kb on - strand, within H281DRAFT_02146 at 288.217 kb on - strand, within H281DRAFT_02146 at 288.218 kb on + strand, within H281DRAFT_02146 at 288.219 kb on - strand, within H281DRAFT_02146 at 288.219 kb on - strand, within H281DRAFT_02146 at 288.484 kb on + strand, within H281DRAFT_02146 at 288.484 kb on + strand, within H281DRAFT_02146 at 288.484 kb on + strand, within H281DRAFT_02146 at 288.485 kb on - strand, within H281DRAFT_02146 at 288.485 kb on - strand, within H281DRAFT_02146 at 288.485 kb on - strand, within H281DRAFT_02146 at 288.711 kb on + strand, within H281DRAFT_02146 at 288.839 kb on + strand, within H281DRAFT_02146 at 288.840 kb on - strand, within H281DRAFT_02146 at 288.882 kb on - strand, within H281DRAFT_02146 at 288.897 kb on - strand at 288.897 kb on - strand at 288.954 kb on - strand at 288.996 kb on + strand at 288.996 kb on + strand at 289.147 kb on - strand at 289.174 kb on - strand at 289.174 kb on - strand at 289.264 kb on + strand, within H281DRAFT_02147 at 289.265 kb on - strand at 289.289 kb on + strand at 289.290 kb on - strand at 289.290 kb on - strand at 289.290 kb on - strand at 289.496 kb on + strand, within H281DRAFT_02148 at 289.610 kb on + strand, within H281DRAFT_02148 at 289.610 kb on + strand, within H281DRAFT_02148 at 289.885 kb on + strand, within H281DRAFT_02149 at 289.885 kb on + strand, within H281DRAFT_02149 at 289.886 kb on - strand, within H281DRAFT_02149 at 289.981 kb on + strand, within H281DRAFT_02149 at 289.982 kb on - strand, within H281DRAFT_02149 at 289.982 kb on - strand, within H281DRAFT_02149 at 290.028 kb on - strand, within H281DRAFT_02149 at 290.028 kb on - strand, within H281DRAFT_02149 at 290.071 kb on + strand, within H281DRAFT_02149 at 290.071 kb on + strand, within H281DRAFT_02149 at 290.072 kb on - strand, within H281DRAFT_02149 at 290.072 kb on - strand, within H281DRAFT_02149 at 290.136 kb on - strand, within H281DRAFT_02149 at 290.136 kb on - strand, within H281DRAFT_02149 at 290.163 kb on - strand, within H281DRAFT_02149
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 288,217 - H281DRAFT_02146 0.35 -0.7 288,217 - H281DRAFT_02146 0.35 +0.8 288,217 - H281DRAFT_02146 0.35 +0.3 288,217 - H281DRAFT_02146 0.35 -0.7 288,217 - H281DRAFT_02146 0.35 +0.2 288,218 + H281DRAFT_02146 0.35 -1.6 288,219 - H281DRAFT_02146 0.35 +1.8 288,219 - H281DRAFT_02146 0.35 +0.3 288,484 + H281DRAFT_02146 0.57 -0.6 288,484 + H281DRAFT_02146 0.57 +0.1 288,484 + H281DRAFT_02146 0.57 +0.5 288,485 - H281DRAFT_02146 0.57 +0.3 288,485 - H281DRAFT_02146 0.57 +1.3 288,485 - H281DRAFT_02146 0.57 -0.1 288,711 + H281DRAFT_02146 0.76 -0.1 288,839 + H281DRAFT_02146 0.86 +0.5 288,840 - H281DRAFT_02146 0.86 -0.6 288,882 - H281DRAFT_02146 0.90 -0.4 288,897 - +0.5 288,897 - -0.0 288,954 - -0.4 288,996 + +0.3 288,996 + +1.4 289,147 - -0.0 289,174 - -0.4 289,174 - -0.2 289,264 + H281DRAFT_02147 0.88 -0.4 289,265 - -0.2 289,289 + -0.8 289,290 - -1.6 289,290 - +0.4 289,290 - +0.2 289,496 + H281DRAFT_02148 0.46 -0.2 289,610 + H281DRAFT_02148 0.78 -2.7 289,610 + H281DRAFT_02148 0.78 -0.3 289,885 + H281DRAFT_02149 0.26 -0.7 289,885 + H281DRAFT_02149 0.26 +0.5 289,886 - H281DRAFT_02149 0.26 -0.9 289,981 + H281DRAFT_02149 0.38 -0.6 289,982 - H281DRAFT_02149 0.38 -0.8 289,982 - H281DRAFT_02149 0.38 +0.7 290,028 - H281DRAFT_02149 0.44 +1.6 290,028 - H281DRAFT_02149 0.44 -0.4 290,071 + H281DRAFT_02149 0.49 +0.1 290,071 + H281DRAFT_02149 0.49 -0.2 290,072 - H281DRAFT_02149 0.49 +1.0 290,072 - H281DRAFT_02149 0.49 +1.2 290,136 - H281DRAFT_02149 0.57 +0.5 290,136 - H281DRAFT_02149 0.57 +0.3 290,163 - H281DRAFT_02149 0.61 -0.2
Or see this region's nucleotide sequence