Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02113 and H281DRAFT_02114 are separated by 569 nucleotides H281DRAFT_02114 and H281DRAFT_02115 are separated by 311 nucleotides
H281DRAFT_02113: H281DRAFT_02113 - hypothetical protein, at 241,554 to 242,009
_02113
H281DRAFT_02114: H281DRAFT_02114 - solute carrier family 10 (sodium/bile acid cotransporter), member 7, at 242,579 to 243,604
_02114
H281DRAFT_02115: H281DRAFT_02115 - diguanylate cyclase/phosphodiesterase, at 243,916 to 245,772
_02115
Position (kb) 242
243
244 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 241.637 kb on + strand, within H281DRAFT_02113 at 241.639 kb on + strand, within H281DRAFT_02113 at 241.639 kb on + strand, within H281DRAFT_02113 at 241.744 kb on + strand, within H281DRAFT_02113 at 241.744 kb on + strand, within H281DRAFT_02113 at 241.745 kb on - strand, within H281DRAFT_02113 at 241.745 kb on - strand, within H281DRAFT_02113 at 241.745 kb on - strand, within H281DRAFT_02113 at 241.871 kb on - strand, within H281DRAFT_02113 at 241.885 kb on + strand, within H281DRAFT_02113 at 241.885 kb on + strand, within H281DRAFT_02113 at 241.885 kb on + strand, within H281DRAFT_02113 at 241.885 kb on + strand, within H281DRAFT_02113 at 241.885 kb on + strand, within H281DRAFT_02113 at 241.885 kb on + strand, within H281DRAFT_02113 at 241.886 kb on - strand, within H281DRAFT_02113 at 241.886 kb on - strand, within H281DRAFT_02113 at 242.136 kb on + strand at 242.141 kb on + strand at 242.142 kb on - strand at 242.142 kb on - strand at 242.178 kb on + strand at 242.198 kb on - strand at 242.198 kb on - strand at 242.241 kb on + strand at 242.241 kb on + strand at 242.253 kb on - strand at 242.264 kb on + strand at 242.330 kb on + strand at 242.330 kb on + strand at 242.334 kb on + strand at 242.334 kb on + strand at 242.334 kb on + strand at 242.334 kb on + strand at 242.334 kb on + strand at 242.335 kb on - strand at 242.335 kb on - strand at 242.335 kb on - strand at 242.335 kb on - strand at 242.638 kb on - strand at 242.725 kb on - strand, within H281DRAFT_02114 at 242.725 kb on - strand, within H281DRAFT_02114 at 243.059 kb on - strand, within H281DRAFT_02114 at 243.086 kb on - strand, within H281DRAFT_02114 at 243.624 kb on - strand at 243.624 kb on - strand at 243.624 kb on - strand at 243.624 kb on - strand at 243.635 kb on - strand at 243.689 kb on - strand at 243.733 kb on + strand at 243.734 kb on - strand at 243.757 kb on - strand at 243.847 kb on + strand at 243.848 kb on + strand at 243.848 kb on + strand at 243.860 kb on + strand at 243.860 kb on + strand at 243.860 kb on + strand at 243.860 kb on + strand at 243.861 kb on - strand at 243.861 kb on - strand at 243.861 kb on - strand at 243.861 kb on - strand at 243.861 kb on - strand at 243.861 kb on - strand at 243.903 kb on - strand at 243.992 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 241,637 + H281DRAFT_02113 0.18 +0.2 241,639 + H281DRAFT_02113 0.19 +2.2 241,639 + H281DRAFT_02113 0.19 +0.4 241,744 + H281DRAFT_02113 0.42 +0.4 241,744 + H281DRAFT_02113 0.42 +0.3 241,745 - H281DRAFT_02113 0.42 +0.2 241,745 - H281DRAFT_02113 0.42 +0.6 241,745 - H281DRAFT_02113 0.42 +0.3 241,871 - H281DRAFT_02113 0.70 +1.7 241,885 + H281DRAFT_02113 0.73 +0.7 241,885 + H281DRAFT_02113 0.73 -0.5 241,885 + H281DRAFT_02113 0.73 -0.4 241,885 + H281DRAFT_02113 0.73 -0.7 241,885 + H281DRAFT_02113 0.73 -0.9 241,885 + H281DRAFT_02113 0.73 +0.1 241,886 - H281DRAFT_02113 0.73 -0.3 241,886 - H281DRAFT_02113 0.73 -0.0 242,136 + -0.9 242,141 + -0.7 242,142 - -0.2 242,142 - -2.3 242,178 + +0.8 242,198 - +0.8 242,198 - +0.1 242,241 + +0.3 242,241 + +0.3 242,253 - +3.5 242,264 + +0.2 242,330 + -0.4 242,330 + -0.4 242,334 + +0.1 242,334 + -1.4 242,334 + -0.3 242,334 + +0.4 242,334 + -0.1 242,335 - -0.7 242,335 - +1.1 242,335 - +0.6 242,335 - +0.4 242,638 - +0.2 242,725 - H281DRAFT_02114 0.14 +0.5 242,725 - H281DRAFT_02114 0.14 -1.4 243,059 - H281DRAFT_02114 0.47 -0.1 243,086 - H281DRAFT_02114 0.49 -1.2 243,624 - -0.1 243,624 - -0.4 243,624 - -0.3 243,624 - +0.9 243,635 - +0.0 243,689 - +0.6 243,733 + -0.4 243,734 - -1.0 243,757 - +0.5 243,847 + +0.1 243,848 + +0.6 243,848 + -0.3 243,860 + +0.5 243,860 + +0.1 243,860 + -0.1 243,860 + -0.4 243,861 - -0.2 243,861 - -0.0 243,861 - +0.7 243,861 - -0.3 243,861 - +0.5 243,861 - -0.6 243,903 - -1.4 243,992 + -0.0
Or see this region's nucleotide sequence