Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02105 and H281DRAFT_02106 are separated by 374 nucleotides H281DRAFT_02106 and H281DRAFT_02107 are separated by 113 nucleotides H281DRAFT_02107 and H281DRAFT_02108 are separated by 10 nucleotides
H281DRAFT_02105: H281DRAFT_02105 - Glyoxylase, beta-lactamase superfamily II, at 230,191 to 231,129
_02105
H281DRAFT_02106: H281DRAFT_02106 - Threonine/homoserine efflux transporter RhtA, at 231,504 to 232,403
_02106
H281DRAFT_02107: H281DRAFT_02107 - Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein, at 232,517 to 232,987
_02107
H281DRAFT_02108: H281DRAFT_02108 - haloacetate dehalogenase, at 232,998 to 233,888
_02108
Position (kb) 231
232
233 Strain fitness (log2 ratio) -2
-1
0
1
2 at 230.790 kb on + strand, within H281DRAFT_02105 at 231.127 kb on + strand at 231.135 kb on + strand at 231.250 kb on + strand at 231.251 kb on - strand at 231.251 kb on - strand at 231.430 kb on - strand at 231.430 kb on - strand at 231.449 kb on + strand at 231.450 kb on - strand at 231.465 kb on + strand at 231.606 kb on + strand, within H281DRAFT_02106 at 231.606 kb on + strand, within H281DRAFT_02106 at 231.606 kb on + strand, within H281DRAFT_02106 at 231.606 kb on + strand, within H281DRAFT_02106 at 231.699 kb on + strand, within H281DRAFT_02106 at 231.709 kb on + strand, within H281DRAFT_02106 at 231.721 kb on + strand, within H281DRAFT_02106 at 231.721 kb on + strand, within H281DRAFT_02106 at 231.721 kb on + strand, within H281DRAFT_02106 at 231.721 kb on + strand, within H281DRAFT_02106 at 231.721 kb on + strand, within H281DRAFT_02106 at 231.721 kb on + strand, within H281DRAFT_02106 at 231.721 kb on + strand, within H281DRAFT_02106 at 231.722 kb on - strand, within H281DRAFT_02106 at 231.722 kb on - strand, within H281DRAFT_02106 at 231.722 kb on - strand, within H281DRAFT_02106 at 231.722 kb on - strand, within H281DRAFT_02106 at 231.722 kb on - strand, within H281DRAFT_02106 at 231.904 kb on + strand, within H281DRAFT_02106 at 232.442 kb on + strand at 232.443 kb on - strand at 232.443 kb on - strand at 232.443 kb on - strand at 232.463 kb on + strand at 232.463 kb on + strand at 232.464 kb on - strand at 232.478 kb on - strand at 232.500 kb on - strand at 232.999 kb on + strand at 233.064 kb on + strand at 233.068 kb on + strand at 233.068 kb on + strand at 233.069 kb on - strand at 233.254 kb on + strand, within H281DRAFT_02108 at 233.306 kb on - strand, within H281DRAFT_02108 at 233.374 kb on + strand, within H281DRAFT_02108 at 233.374 kb on + strand, within H281DRAFT_02108 at 233.374 kb on + strand, within H281DRAFT_02108
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 230,790 + H281DRAFT_02105 0.64 -0.6 231,127 + -2.0 231,135 + -0.4 231,250 + +0.1 231,251 - -1.6 231,251 - +0.3 231,430 - +0.1 231,430 - -0.9 231,449 + +0.9 231,450 - +0.3 231,465 + +1.3 231,606 + H281DRAFT_02106 0.11 +0.0 231,606 + H281DRAFT_02106 0.11 -0.4 231,606 + H281DRAFT_02106 0.11 +1.9 231,606 + H281DRAFT_02106 0.11 +0.4 231,699 + H281DRAFT_02106 0.22 +0.8 231,709 + H281DRAFT_02106 0.23 +1.4 231,721 + H281DRAFT_02106 0.24 -1.3 231,721 + H281DRAFT_02106 0.24 +0.7 231,721 + H281DRAFT_02106 0.24 -0.6 231,721 + H281DRAFT_02106 0.24 +0.9 231,721 + H281DRAFT_02106 0.24 +1.1 231,721 + H281DRAFT_02106 0.24 -0.9 231,721 + H281DRAFT_02106 0.24 +0.6 231,722 - H281DRAFT_02106 0.24 -0.9 231,722 - H281DRAFT_02106 0.24 -0.7 231,722 - H281DRAFT_02106 0.24 +0.2 231,722 - H281DRAFT_02106 0.24 -2.5 231,722 - H281DRAFT_02106 0.24 +0.3 231,904 + H281DRAFT_02106 0.44 +0.4 232,442 + +1.4 232,443 - -0.6 232,443 - -1.6 232,443 - +2.2 232,463 + -0.9 232,463 + -1.1 232,464 - +0.5 232,478 - -0.9 232,500 - -0.9 232,999 + +0.5 233,064 + +0.0 233,068 + -0.4 233,068 + +0.2 233,069 - +0.4 233,254 + H281DRAFT_02108 0.29 -0.3 233,306 - H281DRAFT_02108 0.35 +0.1 233,374 + H281DRAFT_02108 0.42 -0.5 233,374 + H281DRAFT_02108 0.42 -1.4 233,374 + H281DRAFT_02108 0.42 +0.1
Or see this region's nucleotide sequence