Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01939 and H281DRAFT_01940 are separated by 163 nucleotides H281DRAFT_01940 and H281DRAFT_01941 are separated by 149 nucleotides H281DRAFT_01941 and H281DRAFT_01942 are separated by 114 nucleotides
H281DRAFT_01939: H281DRAFT_01939 - ribose-phosphate pyrophosphokinase, at 55,486 to 56,442
_01939
H281DRAFT_01940: H281DRAFT_01940 - LSU ribosomal protein L25P, at 56,606 to 57,223
_01940
H281DRAFT_01941: H281DRAFT_01941 - peptidyl-tRNA hydrolase, at 57,373 to 57,975
_01941
H281DRAFT_01942: H281DRAFT_01942 - histidinol-phosphate aminotransferase, at 58,090 to 59,169
_01942
Position (kb) 56
57
58 Strain fitness (log2 ratio) -1
0
1 at 56.440 kb on + strand at 56.444 kb on + strand at 57.322 kb on + strand at 57.928 kb on - strand at 57.973 kb on + strand at 57.973 kb on + strand at 57.974 kb on - strand at 57.974 kb on - strand at 58.078 kb on + strand at 58.132 kb on + strand at 58.133 kb on - strand at 58.133 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 56,440 + -0.6 56,444 + +0.7 57,322 + +0.6 57,928 - +0.8 57,973 + -0.2 57,973 + -0.6 57,974 - -0.0 57,974 - +1.0 58,078 + +0.4 58,132 + +0.3 58,133 - -0.7 58,133 - +0.2
Or see this region's nucleotide sequence