Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01879 and H281DRAFT_01880 are separated by 263 nucleotides H281DRAFT_01880 and H281DRAFT_01881 overlap by 4 nucleotides H281DRAFT_01881 and H281DRAFT_01882 are separated by 956 nucleotides
H281DRAFT_01879: H281DRAFT_01879 - Response regulator, at 796,568 to 796,954
_01879
H281DRAFT_01880: H281DRAFT_01880 - two component transcriptional regulator, LuxR family, at 797,218 to 797,877
_01880
H281DRAFT_01881: H281DRAFT_01881 - two-component system, LuxR family, sensor kinase FixL, at 797,874 to 799,334
_01881
H281DRAFT_01882: H281DRAFT_01882 - Lipid-binding SYLF domain-containing protein, at 800,291 to 800,878
_01882
Position (kb) 797
798
799
800 Strain fitness (log2 ratio) -2
-1
0
1
2 at 797.482 kb on + strand, within H281DRAFT_01880 at 797.880 kb on - strand at 798.909 kb on - strand, within H281DRAFT_01881 at 799.045 kb on - strand, within H281DRAFT_01881 at 799.268 kb on + strand at 799.329 kb on - strand at 799.475 kb on + strand at 799.476 kb on - strand at 799.479 kb on - strand at 799.528 kb on - strand at 799.528 kb on - strand at 799.538 kb on - strand at 799.933 kb on + strand at 800.266 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 797,482 + H281DRAFT_01880 0.40 -0.1 797,880 - +1.8 798,909 - H281DRAFT_01881 0.71 +0.0 799,045 - H281DRAFT_01881 0.80 -0.4 799,268 + +0.8 799,329 - -0.7 799,475 + +0.0 799,476 - +0.1 799,479 - -0.2 799,528 - -0.4 799,528 - -0.3 799,538 - -2.6 799,933 + +0.1 800,266 - -0.5
Or see this region's nucleotide sequence