Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01834 and H281DRAFT_01835 are separated by 180 nucleotides H281DRAFT_01835 and H281DRAFT_01836 are separated by 103 nucleotides
H281DRAFT_01834: H281DRAFT_01834 - protein of unknown function (DUF1338), at 741,502 to 742,530
_01834
H281DRAFT_01835: H281DRAFT_01835 - DNA-binding transcriptional regulator, LysR family, at 742,711 to 743,616
_01835
H281DRAFT_01836: H281DRAFT_01836 - hypothetical protein, at 743,720 to 744,448
_01836
Position (kb) 742
743
744 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 741.885 kb on - strand, within H281DRAFT_01834 at 742.047 kb on + strand, within H281DRAFT_01834 at 742.361 kb on - strand, within H281DRAFT_01834 at 742.361 kb on - strand, within H281DRAFT_01834 at 742.372 kb on + strand, within H281DRAFT_01834 at 742.570 kb on + strand at 742.571 kb on - strand at 742.609 kb on - strand at 742.630 kb on + strand at 743.191 kb on + strand, within H281DRAFT_01835 at 743.347 kb on - strand, within H281DRAFT_01835 at 743.512 kb on + strand, within H281DRAFT_01835 at 743.513 kb on - strand, within H281DRAFT_01835 at 743.515 kb on + strand, within H281DRAFT_01835 at 743.516 kb on - strand, within H281DRAFT_01835 at 743.516 kb on - strand, within H281DRAFT_01835 at 743.525 kb on - strand, within H281DRAFT_01835 at 743.537 kb on + strand at 743.538 kb on - strand at 743.538 kb on - strand at 743.538 kb on - strand at 743.805 kb on - strand, within H281DRAFT_01836 at 743.997 kb on + strand, within H281DRAFT_01836 at 744.029 kb on + strand, within H281DRAFT_01836 at 744.530 kb on + strand at 744.531 kb on - strand at 744.563 kb on + strand at 744.567 kb on + strand at 744.615 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 741,885 - H281DRAFT_01834 0.37 -0.1 742,047 + H281DRAFT_01834 0.53 -0.1 742,361 - H281DRAFT_01834 0.83 -0.6 742,361 - H281DRAFT_01834 0.83 +0.3 742,372 + H281DRAFT_01834 0.85 -0.5 742,570 + -0.3 742,571 - +3.8 742,609 - +0.2 742,630 + -0.2 743,191 + H281DRAFT_01835 0.53 +0.4 743,347 - H281DRAFT_01835 0.70 +0.2 743,512 + H281DRAFT_01835 0.88 -0.2 743,513 - H281DRAFT_01835 0.89 +0.3 743,515 + H281DRAFT_01835 0.89 -3.1 743,516 - H281DRAFT_01835 0.89 -1.5 743,516 - H281DRAFT_01835 0.89 -1.2 743,525 - H281DRAFT_01835 0.90 -1.0 743,537 + -0.2 743,538 - -0.3 743,538 - -1.6 743,538 - -0.4 743,805 - H281DRAFT_01836 0.12 +1.1 743,997 + H281DRAFT_01836 0.38 +0.4 744,029 + H281DRAFT_01836 0.42 -1.7 744,530 + +4.1 744,531 - +0.2 744,563 + +0.8 744,567 + -0.8 744,615 - +0.3
Or see this region's nucleotide sequence