Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01759 and H281DRAFT_01760 are separated by 347 nucleotides H281DRAFT_01760 and H281DRAFT_01761 are separated by 89 nucleotides H281DRAFT_01761 and H281DRAFT_01762 are separated by 58 nucleotides
H281DRAFT_01759: H281DRAFT_01759 - rsbT co-antagonist protein RsbR, at 654,583 to 655,452
_01759
H281DRAFT_01760: H281DRAFT_01760 - conserved domain-containing protein, at 655,800 to 656,276
_01760
H281DRAFT_01761: H281DRAFT_01761 - conserved domain-containing protein, at 656,366 to 657,238
_01761
H281DRAFT_01762: H281DRAFT_01762 - Cytochrome c, mono- and diheme variants, at 657,297 to 658,649
_01762
Position (kb) 656
657
658 Strain fitness (log2 ratio) -1
0
1
2 at 655.466 kb on - strand at 655.495 kb on + strand at 655.496 kb on - strand at 655.537 kb on - strand at 655.537 kb on - strand at 655.537 kb on - strand at 655.537 kb on - strand at 655.581 kb on - strand at 655.581 kb on - strand at 655.716 kb on + strand at 655.717 kb on - strand at 656.388 kb on + strand at 656.786 kb on + strand, within H281DRAFT_01761 at 656.982 kb on + strand, within H281DRAFT_01761 at 656.982 kb on + strand, within H281DRAFT_01761 at 657.086 kb on - strand, within H281DRAFT_01761 at 657.237 kb on - strand at 657.445 kb on - strand, within H281DRAFT_01762 at 657.607 kb on + strand, within H281DRAFT_01762 at 657.607 kb on + strand, within H281DRAFT_01762 at 657.688 kb on + strand, within H281DRAFT_01762 at 657.689 kb on - strand, within H281DRAFT_01762 at 657.763 kb on + strand, within H281DRAFT_01762 at 657.945 kb on + strand, within H281DRAFT_01762 at 658.037 kb on - strand, within H281DRAFT_01762 at 658.037 kb on - strand, within H281DRAFT_01762 at 658.037 kb on - strand, within H281DRAFT_01762
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 655,466 - -0.6 655,495 + +0.4 655,496 - -0.7 655,537 - +0.4 655,537 - +0.1 655,537 - +2.6 655,537 - +0.5 655,581 - +0.3 655,581 - +1.0 655,716 + +0.5 655,717 - -0.6 656,388 + -0.2 656,786 + H281DRAFT_01761 0.48 +0.3 656,982 + H281DRAFT_01761 0.71 +0.4 656,982 + H281DRAFT_01761 0.71 +2.0 657,086 - H281DRAFT_01761 0.82 -0.0 657,237 - +0.8 657,445 - H281DRAFT_01762 0.11 -0.4 657,607 + H281DRAFT_01762 0.23 +0.6 657,607 + H281DRAFT_01762 0.23 +1.1 657,688 + H281DRAFT_01762 0.29 +0.3 657,689 - H281DRAFT_01762 0.29 -0.9 657,763 + H281DRAFT_01762 0.34 +1.6 657,945 + H281DRAFT_01762 0.48 -0.5 658,037 - H281DRAFT_01762 0.55 +1.0 658,037 - H281DRAFT_01762 0.55 -1.3 658,037 - H281DRAFT_01762 0.55 -0.8
Or see this region's nucleotide sequence