Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01551 and H281DRAFT_01552 are separated by 50 nucleotides H281DRAFT_01552 and H281DRAFT_01553 are separated by 192 nucleotides H281DRAFT_01553 and H281DRAFT_01554 are separated by 148 nucleotides H281DRAFT_01554 and H281DRAFT_01555 are separated by 192 nucleotides
H281DRAFT_01551: H281DRAFT_01551 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 424,326 to 425,819
_01551
H281DRAFT_01552: H281DRAFT_01552 - DNA-binding transcriptional regulator, MarR family, at 425,870 to 426,307
_01552
H281DRAFT_01553: H281DRAFT_01553 - Uncharacterized conserved protein, DUF1330 family, at 426,500 to 426,787
_01553
H281DRAFT_01554: H281DRAFT_01554 - RNA polymerase sigma-70 factor, ECF subfamily, at 426,936 to 427,439
_01554
H281DRAFT_01555: H281DRAFT_01555 - UTP:GlnB (protein PII) uridylyltransferase, at 427,632 to 428,402
_01555
Position (kb) 426
427 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 425.681 kb on + strand at 425.682 kb on - strand at 426.107 kb on + strand, within H281DRAFT_01552 at 426.298 kb on - strand at 426.350 kb on + strand at 426.501 kb on + strand at 426.501 kb on + strand at 426.775 kb on + strand at 426.777 kb on + strand at 426.777 kb on + strand at 426.777 kb on + strand at 426.778 kb on - strand at 426.778 kb on - strand at 426.778 kb on - strand at 426.778 kb on - strand at 426.792 kb on + strand at 426.792 kb on + strand at 426.820 kb on + strand at 427.081 kb on + strand, within H281DRAFT_01554 at 427.330 kb on - strand, within H281DRAFT_01554 at 427.706 kb on - strand at 427.768 kb on + strand, within H281DRAFT_01555 at 427.768 kb on + strand, within H281DRAFT_01555
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 425,681 + -1.0 425,682 - +2.0 426,107 + H281DRAFT_01552 0.54 +0.7 426,298 - -1.1 426,350 + -0.5 426,501 + -0.4 426,501 + +0.5 426,775 + -0.7 426,777 + -0.5 426,777 + -1.5 426,777 + +0.1 426,778 - +0.9 426,778 - -0.0 426,778 - +0.5 426,778 - -0.7 426,792 + -0.6 426,792 + -1.3 426,820 + -3.0 427,081 + H281DRAFT_01554 0.29 -1.4 427,330 - H281DRAFT_01554 0.78 +0.5 427,706 - -1.2 427,768 + H281DRAFT_01555 0.18 -0.2 427,768 + H281DRAFT_01555 0.18 +0.2
Or see this region's nucleotide sequence