Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01313

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01312 and H281DRAFT_01313 are separated by 90 nucleotidesH281DRAFT_01313 and H281DRAFT_01314 are separated by 62 nucleotides H281DRAFT_01312: H281DRAFT_01312 - transketolase, at 151,022 to 153,082 _01312 H281DRAFT_01313: H281DRAFT_01313 - phosphoribulokinase, at 153,173 to 154,045 _01313 H281DRAFT_01314: H281DRAFT_01314 - D-fructose 1,6-bisphosphatase (EC 3.1.3.11), at 154,108 to 155,223 _01314 Position (kb) 153 154 155Strain fitness (log2 ratio) -2 -1 0 1at 152.320 kb on + strand, within H281DRAFT_01312at 152.433 kb on + strand, within H281DRAFT_01312at 152.608 kb on - strand, within H281DRAFT_01312at 152.807 kb on - strand, within H281DRAFT_01312at 152.817 kb on + strand, within H281DRAFT_01312at 152.842 kb on - strand, within H281DRAFT_01312at 152.936 kb on + strandat 153.407 kb on - strand, within H281DRAFT_01313at 153.461 kb on + strand, within H281DRAFT_01313at 153.462 kb on - strand, within H281DRAFT_01313at 153.462 kb on - strand, within H281DRAFT_01313at 153.462 kb on - strand, within H281DRAFT_01313at 153.657 kb on + strand, within H281DRAFT_01313at 153.754 kb on - strand, within H281DRAFT_01313at 154.352 kb on + strand, within H281DRAFT_01314at 154.353 kb on - strand, within H281DRAFT_01314

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
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152,320 + H281DRAFT_01312 0.63 -1.2
152,433 + H281DRAFT_01312 0.68 +1.1
152,608 - H281DRAFT_01312 0.77 -0.3
152,807 - H281DRAFT_01312 0.87 -2.1
152,817 + H281DRAFT_01312 0.87 +1.1
152,842 - H281DRAFT_01312 0.88 +0.5
152,936 + +0.3
153,407 - H281DRAFT_01313 0.27 -0.2
153,461 + H281DRAFT_01313 0.33 -1.6
153,462 - H281DRAFT_01313 0.33 +0.2
153,462 - H281DRAFT_01313 0.33 +0.4
153,462 - H281DRAFT_01313 0.33 -0.3
153,657 + H281DRAFT_01313 0.55 -1.1
153,754 - H281DRAFT_01313 0.67 -0.4
154,352 + H281DRAFT_01314 0.22 +0.8
154,353 - H281DRAFT_01314 0.22 -0.1

Or see this region's nucleotide sequence