Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01278 and H281DRAFT_01279 are separated by 45 nucleotides H281DRAFT_01279 and H281DRAFT_01280 are separated by 396 nucleotides
H281DRAFT_01278: H281DRAFT_01278 - trans-feruloyl-CoA synthase, at 114,886 to 116,775
_01278
H281DRAFT_01279: H281DRAFT_01279 - Nicotinamidase-related amidase, at 116,821 to 117,510
_01279
H281DRAFT_01280: H281DRAFT_01280 - TupA-like ATPgrasp, at 117,907 to 118,923
_01280
Position (kb) 116
117
118 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 116.236 kb on + strand, within H281DRAFT_01278 at 116.377 kb on - strand, within H281DRAFT_01278 at 116.395 kb on + strand, within H281DRAFT_01278 at 116.823 kb on - strand at 116.898 kb on - strand, within H281DRAFT_01279 at 117.107 kb on + strand, within H281DRAFT_01279 at 117.307 kb on - strand, within H281DRAFT_01279 at 117.307 kb on - strand, within H281DRAFT_01279 at 117.307 kb on - strand, within H281DRAFT_01279 at 117.518 kb on + strand at 117.519 kb on - strand at 117.525 kb on + strand at 117.526 kb on - strand at 117.526 kb on - strand at 117.811 kb on + strand at 117.956 kb on + strand at 118.046 kb on + strand, within H281DRAFT_01280 at 118.212 kb on - strand, within H281DRAFT_01280 at 118.333 kb on + strand, within H281DRAFT_01280 at 118.333 kb on + strand, within H281DRAFT_01280 at 118.334 kb on - strand, within H281DRAFT_01280 at 118.334 kb on - strand, within H281DRAFT_01280 at 118.334 kb on - strand, within H281DRAFT_01280 at 118.442 kb on - strand, within H281DRAFT_01280
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 116,236 + H281DRAFT_01278 0.71 -2.8 116,377 - H281DRAFT_01278 0.79 +0.1 116,395 + H281DRAFT_01278 0.80 -0.5 116,823 - +0.1 116,898 - H281DRAFT_01279 0.11 -1.4 117,107 + H281DRAFT_01279 0.41 +0.1 117,307 - H281DRAFT_01279 0.70 -0.2 117,307 - H281DRAFT_01279 0.70 -0.3 117,307 - H281DRAFT_01279 0.70 +0.5 117,518 + +0.1 117,519 - -0.6 117,525 + +0.4 117,526 - +0.3 117,526 - +0.4 117,811 + +0.5 117,956 + +0.4 118,046 + H281DRAFT_01280 0.14 -0.2 118,212 - H281DRAFT_01280 0.30 -0.0 118,333 + H281DRAFT_01280 0.42 -1.4 118,333 + H281DRAFT_01280 0.42 -0.1 118,334 - H281DRAFT_01280 0.42 +3.1 118,334 - H281DRAFT_01280 0.42 +0.4 118,334 - H281DRAFT_01280 0.42 +0.3 118,442 - H281DRAFT_01280 0.53 +0.1
Or see this region's nucleotide sequence