Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01135 and H281DRAFT_01136 are separated by 79 nucleotides H281DRAFT_01136 and H281DRAFT_01137 are separated by 47 nucleotides H281DRAFT_01137 and H281DRAFT_01138 are separated by 5 nucleotides
H281DRAFT_01135: H281DRAFT_01135 - Sugar phosphate permease, at 1,280,526 to 1,281,911
_01135
H281DRAFT_01136: H281DRAFT_01136 - 5-(hydroxymethyl)furfural/furfural oxidase, at 1,281,991 to 1,283,739
_01136
H281DRAFT_01137: H281DRAFT_01137 - 2-oxoglutaroyl-CoA hydrolase, at 1,283,787 to 1,284,593
_01137
H281DRAFT_01138: H281DRAFT_01138 - 2-furoate---CoA ligase, at 1,284,599 to 1,286,215
_01138
Position (kb)
1281
1282
1283
1284 Strain fitness (log2 ratio)
-2
-1
0
1 at 1281.445 kb on + strand, within H281DRAFT_01135 at 1281.477 kb on - strand, within H281DRAFT_01135 at 1281.843 kb on + strand at 1281.844 kb on - strand at 1282.718 kb on + strand, within H281DRAFT_01136 at 1283.378 kb on - strand, within H281DRAFT_01136 at 1283.502 kb on - strand, within H281DRAFT_01136 at 1283.555 kb on + strand, within H281DRAFT_01136 at 1283.870 kb on + strand, within H281DRAFT_01137 at 1284.181 kb on + strand, within H281DRAFT_01137
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 1,281,445 + H281DRAFT_01135 0.66 -1.7 1,281,477 - H281DRAFT_01135 0.69 -0.6 1,281,843 + -1.5 1,281,844 - -0.7 1,282,718 + H281DRAFT_01136 0.42 -1.2 1,283,378 - H281DRAFT_01136 0.79 +0.2 1,283,502 - H281DRAFT_01136 0.86 -0.2 1,283,555 + H281DRAFT_01136 0.89 -2.2 1,283,870 + H281DRAFT_01137 0.10 -0.6 1,284,181 + H281DRAFT_01137 0.49 -2.7
Or see this region's nucleotide sequence