Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01020

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01019 and H281DRAFT_01020 are separated by 327 nucleotidesH281DRAFT_01020 and H281DRAFT_01021 are separated by 118 nucleotidesH281DRAFT_01021 and H281DRAFT_01022 are separated by 187 nucleotides H281DRAFT_01019: H281DRAFT_01019 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 1,143,606 to 1,144,316 _01019 H281DRAFT_01020: H281DRAFT_01020 - FMN-dependent NADH-azoreductase, at 1,144,644 to 1,145,276 _01020 H281DRAFT_01021: H281DRAFT_01021 - Nitroreductase, at 1,145,395 to 1,145,841 _01021 H281DRAFT_01022: H281DRAFT_01022 - GntR family transcriptional regulator / MocR family aminotransferase, at 1,146,029 to 1,147,441 _01022 Position (kb) 1144 1145 1146Strain fitness (log2 ratio) -1 0 1at 1143.889 kb on + strand, within H281DRAFT_01019at 1143.890 kb on - strand, within H281DRAFT_01019at 1145.387 kb on - strandat 1145.683 kb on + strand, within H281DRAFT_01021at 1145.684 kb on - strand, within H281DRAFT_01021at 1145.817 kb on + strandat 1146.115 kb on - strandat 1146.209 kb on + strand, within H281DRAFT_01022

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
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1,143,889 + H281DRAFT_01019 0.40 -0.5
1,143,890 - H281DRAFT_01019 0.40 -0.1
1,145,387 - +1.2
1,145,683 + H281DRAFT_01021 0.64 -0.5
1,145,684 - H281DRAFT_01021 0.65 -0.7
1,145,817 + +0.2
1,146,115 - -0.5
1,146,209 + H281DRAFT_01022 0.13 -0.2

Or see this region's nucleotide sequence