Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01019 and H281DRAFT_01020 are separated by 327 nucleotides H281DRAFT_01020 and H281DRAFT_01021 are separated by 118 nucleotides H281DRAFT_01021 and H281DRAFT_01022 are separated by 187 nucleotides
H281DRAFT_01019: H281DRAFT_01019 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 1,143,606 to 1,144,316
_01019
H281DRAFT_01020: H281DRAFT_01020 - FMN-dependent NADH-azoreductase, at 1,144,644 to 1,145,276
_01020
H281DRAFT_01021: H281DRAFT_01021 - Nitroreductase, at 1,145,395 to 1,145,841
_01021
H281DRAFT_01022: H281DRAFT_01022 - GntR family transcriptional regulator / MocR family aminotransferase, at 1,146,029 to 1,147,441
_01022
Position (kb)
1144
1145
1146 Strain fitness (log2 ratio)
-1
0
1 at 1143.889 kb on + strand, within H281DRAFT_01019 at 1143.890 kb on - strand, within H281DRAFT_01019 at 1145.387 kb on - strand at 1145.683 kb on + strand, within H281DRAFT_01021 at 1145.684 kb on - strand, within H281DRAFT_01021 at 1145.817 kb on + strand at 1146.115 kb on - strand at 1146.209 kb on + strand, within H281DRAFT_01022
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 1,143,889 + H281DRAFT_01019 0.40 -0.5 1,143,890 - H281DRAFT_01019 0.40 -0.1 1,145,387 - +1.2 1,145,683 + H281DRAFT_01021 0.64 -0.5 1,145,684 - H281DRAFT_01021 0.65 -0.7 1,145,817 + +0.2 1,146,115 - -0.5 1,146,209 + H281DRAFT_01022 0.13 -0.2
Or see this region's nucleotide sequence