Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00924 and H281DRAFT_00925 are separated by 3 nucleotides H281DRAFT_00925 and H281DRAFT_00926 are separated by 121 nucleotides
H281DRAFT_00924: H281DRAFT_00924 - acetyl esterase, at 1,027,910 to 1,028,866
_00924
H281DRAFT_00925: H281DRAFT_00925 - Uncharacterized conserved protein, contains NRDE domain, at 1,028,870 to 1,029,751
_00925
H281DRAFT_00926: H281DRAFT_00926 - hypothetical protein, at 1,029,873 to 1,031,009
_00926
Position (kb) 1028
1029
1030 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1027.882 kb on - strand at 1027.882 kb on - strand at 1027.892 kb on + strand at 1027.893 kb on - strand at 1027.898 kb on + strand at 1027.898 kb on + strand at 1028.114 kb on + strand, within H281DRAFT_00924 at 1028.162 kb on + strand, within H281DRAFT_00924 at 1028.162 kb on + strand, within H281DRAFT_00924 at 1028.162 kb on + strand, within H281DRAFT_00924 at 1028.162 kb on + strand, within H281DRAFT_00924 at 1028.162 kb on + strand, within H281DRAFT_00924 at 1028.163 kb on - strand, within H281DRAFT_00924 at 1028.165 kb on + strand, within H281DRAFT_00924 at 1028.201 kb on - strand, within H281DRAFT_00924 at 1028.571 kb on - strand, within H281DRAFT_00924 at 1028.571 kb on - strand, within H281DRAFT_00924 at 1028.681 kb on + strand, within H281DRAFT_00924 at 1028.711 kb on + strand, within H281DRAFT_00924 at 1028.865 kb on - strand at 1028.999 kb on + strand, within H281DRAFT_00925 at 1029.000 kb on - strand, within H281DRAFT_00925 at 1029.031 kb on - strand, within H281DRAFT_00925 at 1029.266 kb on - strand, within H281DRAFT_00925 at 1029.287 kb on - strand, within H281DRAFT_00925 at 1029.354 kb on + strand, within H281DRAFT_00925 at 1029.354 kb on + strand, within H281DRAFT_00925 at 1029.354 kb on + strand, within H281DRAFT_00925 at 1029.355 kb on - strand, within H281DRAFT_00925 at 1029.355 kb on - strand, within H281DRAFT_00925 at 1029.355 kb on - strand, within H281DRAFT_00925 at 1029.387 kb on + strand, within H281DRAFT_00925 at 1029.388 kb on - strand, within H281DRAFT_00925 at 1029.388 kb on - strand, within H281DRAFT_00925 at 1029.388 kb on - strand, within H281DRAFT_00925 at 1029.541 kb on - strand, within H281DRAFT_00925 at 1029.541 kb on - strand, within H281DRAFT_00925 at 1029.743 kb on + strand at 1029.743 kb on + strand at 1029.743 kb on + strand at 1029.744 kb on - strand at 1029.744 kb on - strand at 1029.744 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 1,027,882 - -0.9 1,027,882 - -0.6 1,027,892 + +0.4 1,027,893 - -3.2 1,027,898 + +1.8 1,027,898 + +0.7 1,028,114 + H281DRAFT_00924 0.21 +2.4 1,028,162 + H281DRAFT_00924 0.26 +1.4 1,028,162 + H281DRAFT_00924 0.26 -1.0 1,028,162 + H281DRAFT_00924 0.26 +0.6 1,028,162 + H281DRAFT_00924 0.26 -1.0 1,028,162 + H281DRAFT_00924 0.26 +0.6 1,028,163 - H281DRAFT_00924 0.26 +0.1 1,028,165 + H281DRAFT_00924 0.27 +0.6 1,028,201 - H281DRAFT_00924 0.30 +0.5 1,028,571 - H281DRAFT_00924 0.69 +1.0 1,028,571 - H281DRAFT_00924 0.69 +0.2 1,028,681 + H281DRAFT_00924 0.81 +0.4 1,028,711 + H281DRAFT_00924 0.84 +0.8 1,028,865 - +1.4 1,028,999 + H281DRAFT_00925 0.15 -0.5 1,029,000 - H281DRAFT_00925 0.15 -2.5 1,029,031 - H281DRAFT_00925 0.18 +0.3 1,029,266 - H281DRAFT_00925 0.45 -0.2 1,029,287 - H281DRAFT_00925 0.47 +0.5 1,029,354 + H281DRAFT_00925 0.55 +0.5 1,029,354 + H281DRAFT_00925 0.55 +0.7 1,029,354 + H281DRAFT_00925 0.55 -0.5 1,029,355 - H281DRAFT_00925 0.55 -0.1 1,029,355 - H281DRAFT_00925 0.55 -0.3 1,029,355 - H281DRAFT_00925 0.55 -0.3 1,029,387 + H281DRAFT_00925 0.59 +0.2 1,029,388 - H281DRAFT_00925 0.59 -0.6 1,029,388 - H281DRAFT_00925 0.59 +1.1 1,029,388 - H281DRAFT_00925 0.59 -0.0 1,029,541 - H281DRAFT_00925 0.76 +0.4 1,029,541 - H281DRAFT_00925 0.76 -0.7 1,029,743 + +0.0 1,029,743 + +0.8 1,029,743 + +0.3 1,029,744 - -1.0 1,029,744 - +0.4 1,029,744 - +0.3
Or see this region's nucleotide sequence