Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00862 and H281DRAFT_00863 overlap by 4 nucleotides H281DRAFT_00863 and H281DRAFT_00864 overlap by 4 nucleotides H281DRAFT_00864 and H281DRAFT_00865 are separated by 48 nucleotides H281DRAFT_00865 and H281DRAFT_00866 are separated by 187 nucleotides
H281DRAFT_00862: H281DRAFT_00862 - DNA end-binding protein Ku, at 953,792 to 954,820
_00862
H281DRAFT_00863: H281DRAFT_00863 - hypothetical protein, at 954,817 to 954,963
_00863
H281DRAFT_00864: H281DRAFT_00864 - ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module, at 954,960 to 957,980
_00864
H281DRAFT_00865: H281DRAFT_00865 - hypothetical protein, at 958,029 to 958,337
_00865
H281DRAFT_00866: H281DRAFT_00866 - transcriptional regulator, LysR family, at 958,525 to 959,487
_00866
Position (kb) 954
955
956
957
958 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 954.005 kb on + strand at 954.005 kb on + strand, within H281DRAFT_00862 at 954.005 kb on + strand, within H281DRAFT_00862 at 954.006 kb on - strand, within H281DRAFT_00862 at 954.006 kb on - strand, within H281DRAFT_00862 at 954.006 kb on - strand, within H281DRAFT_00862 at 954.068 kb on - strand, within H281DRAFT_00862 at 954.159 kb on - strand, within H281DRAFT_00862 at 954.425 kb on + strand, within H281DRAFT_00862 at 954.745 kb on + strand at 954.982 kb on - strand at 954.982 kb on - strand at 954.982 kb on - strand at 955.092 kb on + strand at 955.509 kb on + strand, within H281DRAFT_00864 at 955.509 kb on + strand, within H281DRAFT_00864 at 955.510 kb on - strand, within H281DRAFT_00864 at 955.510 kb on - strand, within H281DRAFT_00864 at 955.745 kb on - strand, within H281DRAFT_00864 at 956.304 kb on + strand, within H281DRAFT_00864 at 956.307 kb on - strand, within H281DRAFT_00864 at 956.307 kb on - strand, within H281DRAFT_00864 at 956.307 kb on - strand, within H281DRAFT_00864 at 956.430 kb on + strand, within H281DRAFT_00864 at 956.431 kb on - strand, within H281DRAFT_00864 at 956.454 kb on + strand, within H281DRAFT_00864 at 956.955 kb on - strand, within H281DRAFT_00864 at 957.181 kb on - strand, within H281DRAFT_00864 at 957.181 kb on - strand, within H281DRAFT_00864 at 957.803 kb on - strand at 957.866 kb on + strand at 957.921 kb on + strand at 958.003 kb on - strand at 958.005 kb on + strand at 958.197 kb on - strand, within H281DRAFT_00865 at 958.385 kb on + strand at 958.400 kb on + strand at 958.401 kb on - strand at 958.877 kb on - strand, within H281DRAFT_00866
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 954,005 + -0.2 954,005 + H281DRAFT_00862 0.21 +0.1 954,005 + H281DRAFT_00862 0.21 +0.1 954,006 - H281DRAFT_00862 0.21 +2.4 954,006 - H281DRAFT_00862 0.21 +0.1 954,006 - H281DRAFT_00862 0.21 -0.5 954,068 - H281DRAFT_00862 0.27 +0.1 954,159 - H281DRAFT_00862 0.36 -0.3 954,425 + H281DRAFT_00862 0.62 -0.1 954,745 + -0.3 954,982 - -2.9 954,982 - +1.4 954,982 - +0.8 955,092 + +0.0 955,509 + H281DRAFT_00864 0.18 -1.7 955,509 + H281DRAFT_00864 0.18 +0.4 955,510 - H281DRAFT_00864 0.18 +0.0 955,510 - H281DRAFT_00864 0.18 +0.4 955,745 - H281DRAFT_00864 0.26 +0.2 956,304 + H281DRAFT_00864 0.44 +0.4 956,307 - H281DRAFT_00864 0.45 -0.1 956,307 - H281DRAFT_00864 0.45 -0.5 956,307 - H281DRAFT_00864 0.45 -0.1 956,430 + H281DRAFT_00864 0.49 +0.9 956,431 - H281DRAFT_00864 0.49 -0.0 956,454 + H281DRAFT_00864 0.49 +0.0 956,955 - H281DRAFT_00864 0.66 +0.0 957,181 - H281DRAFT_00864 0.74 +0.2 957,181 - H281DRAFT_00864 0.74 +0.5 957,803 - +1.7 957,866 + -3.4 957,921 + +0.1 958,003 - +0.3 958,005 + +0.5 958,197 - H281DRAFT_00865 0.54 -0.7 958,385 + +1.2 958,400 + +0.2 958,401 - +0.2 958,877 - H281DRAFT_00866 0.37 +0.4
Or see this region's nucleotide sequence