Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00685 and H281DRAFT_00686 are separated by 112 nucleotides H281DRAFT_00686 and H281DRAFT_00687 are separated by 875 nucleotides
H281DRAFT_00685: H281DRAFT_00685 - hypothetical protein, at 765,085 to 767,313
_00685
H281DRAFT_00686: H281DRAFT_00686 - CHAD domain-containing protein, at 767,426 to 768,259
_00686
H281DRAFT_00687: H281DRAFT_00687 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 769,135 to 769,575
_00687
Position (kb) 767
768
769 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 766.802 kb on - strand, within H281DRAFT_00685 at 767.056 kb on + strand, within H281DRAFT_00685 at 767.057 kb on - strand, within H281DRAFT_00685 at 767.059 kb on - strand, within H281DRAFT_00685 at 767.251 kb on + strand at 767.694 kb on + strand, within H281DRAFT_00686 at 767.695 kb on - strand, within H281DRAFT_00686 at 767.875 kb on + strand, within H281DRAFT_00686 at 767.876 kb on - strand, within H281DRAFT_00686 at 768.085 kb on + strand, within H281DRAFT_00686 at 768.290 kb on + strand at 768.371 kb on + strand at 768.375 kb on - strand at 768.530 kb on - strand at 768.533 kb on + strand at 768.533 kb on + strand at 768.689 kb on - strand at 768.692 kb on - strand at 768.692 kb on - strand at 768.832 kb on + strand at 768.832 kb on + strand at 768.908 kb on - strand at 769.065 kb on + strand at 769.179 kb on + strand, within H281DRAFT_00687
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 766,802 - H281DRAFT_00685 0.77 -2.8 767,056 + H281DRAFT_00685 0.88 +2.2 767,057 - H281DRAFT_00685 0.88 +0.9 767,059 - H281DRAFT_00685 0.89 +0.5 767,251 + -0.5 767,694 + H281DRAFT_00686 0.32 -0.2 767,695 - H281DRAFT_00686 0.32 +0.1 767,875 + H281DRAFT_00686 0.54 +0.3 767,876 - H281DRAFT_00686 0.54 +1.3 768,085 + H281DRAFT_00686 0.79 +0.4 768,290 + -0.9 768,371 + -0.5 768,375 - -0.1 768,530 - +0.2 768,533 + +2.8 768,533 + -2.1 768,689 - +0.2 768,692 - +0.3 768,692 - -0.5 768,832 + +0.4 768,832 + -1.0 768,908 - +2.9 769,065 + +1.5 769,179 + H281DRAFT_00687 0.10 -0.2
Or see this region's nucleotide sequence