Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00344 and H281DRAFT_00345 are separated by 759 nucleotides H281DRAFT_00345 and H281DRAFT_00346 are separated by 241 nucleotides H281DRAFT_00346 and H281DRAFT_00347 are separated by 121 nucleotides
H281DRAFT_00344: H281DRAFT_00344 - high affinity sulphate transporter 1, at 375,319 to 377,055
_00344
H281DRAFT_00345: H281DRAFT_00345 - Transglutaminase-like enzyme, putative cysteine protease, at 377,815 to 378,618
_00345
H281DRAFT_00346: H281DRAFT_00346 - hypothetical protein, at 378,860 to 379,009
_00346
H281DRAFT_00347: H281DRAFT_00347 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 379,131 to 380,669
_00347
Position (kb) 377
378
379 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 376.842 kb on - strand, within H281DRAFT_00344 at 376.880 kb on + strand, within H281DRAFT_00344 at 376.958 kb on + strand at 377.158 kb on + strand at 377.189 kb on + strand at 377.189 kb on + strand at 377.209 kb on + strand at 377.209 kb on + strand at 377.209 kb on + strand at 377.210 kb on - strand at 377.443 kb on - strand at 377.637 kb on + strand at 377.795 kb on - strand at 377.845 kb on + strand at 377.846 kb on - strand at 377.948 kb on + strand, within H281DRAFT_00345 at 377.956 kb on - strand, within H281DRAFT_00345 at 379.103 kb on - strand at 379.157 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 376,842 - H281DRAFT_00344 0.88 -1.0 376,880 + H281DRAFT_00344 0.90 +1.0 376,958 + +1.2 377,158 + -1.2 377,189 + -1.3 377,189 + -0.1 377,209 + -0.1 377,209 + +0.1 377,209 + +1.3 377,210 - +0.5 377,443 - -1.1 377,637 + +0.1 377,795 - +0.4 377,845 + -3.1 377,846 - -1.1 377,948 + H281DRAFT_00345 0.17 +0.7 377,956 - H281DRAFT_00345 0.18 +0.5 379,103 - -2.9 379,157 - -0.5
Or see this region's nucleotide sequence