Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00151 and H281DRAFT_00152 are separated by 17 nucleotides H281DRAFT_00152 and H281DRAFT_00153 are separated by 460 nucleotides H281DRAFT_00153 and H281DRAFT_00154 are separated by 28 nucleotides
H281DRAFT_00151: H281DRAFT_00151 - condensin subunit ScpA, at 155,680 to 156,555
_00151
H281DRAFT_00152: H281DRAFT_00152 - Protein of unknown function (DUF3460), at 156,573 to 156,758
_00152
H281DRAFT_00153: H281DRAFT_00153 - autotransporter secretion outer membrane protein TamA, at 157,219 to 158,979
_00153
H281DRAFT_00154: H281DRAFT_00154 - autotransporter secretion inner membrane protein TamB, at 159,008 to 163,381
_00154
Position (kb) 157
158
159 Strain fitness (log2 ratio) -1
0
1
2 at 156.590 kb on - strand at 156.590 kb on - strand at 156.590 kb on - strand at 156.596 kb on - strand, within H281DRAFT_00152 at 156.741 kb on - strand at 156.755 kb on - strand at 156.755 kb on - strand at 156.837 kb on - strand at 157.017 kb on + strand at 157.018 kb on - strand at 157.044 kb on + strand at 157.044 kb on + strand at 157.045 kb on - strand at 157.176 kb on + strand at 157.176 kb on + strand at 157.177 kb on - strand at 157.177 kb on - strand at 157.188 kb on + strand at 157.200 kb on + strand at 157.201 kb on - strand at 157.201 kb on - strand at 157.201 kb on - strand at 157.312 kb on + strand at 157.312 kb on + strand at 157.312 kb on + strand at 157.477 kb on + strand, within H281DRAFT_00153 at 157.477 kb on + strand, within H281DRAFT_00153 at 157.478 kb on - strand, within H281DRAFT_00153 at 157.478 kb on - strand, within H281DRAFT_00153 at 157.478 kb on - strand, within H281DRAFT_00153 at 157.509 kb on + strand, within H281DRAFT_00153 at 157.509 kb on + strand, within H281DRAFT_00153 at 157.509 kb on + strand, within H281DRAFT_00153 at 157.569 kb on + strand, within H281DRAFT_00153 at 157.569 kb on + strand, within H281DRAFT_00153 at 157.569 kb on + strand, within H281DRAFT_00153 at 157.570 kb on - strand, within H281DRAFT_00153 at 157.570 kb on - strand, within H281DRAFT_00153 at 157.750 kb on + strand, within H281DRAFT_00153 at 157.751 kb on - strand, within H281DRAFT_00153 at 157.779 kb on + strand, within H281DRAFT_00153 at 157.779 kb on + strand, within H281DRAFT_00153 at 157.779 kb on + strand, within H281DRAFT_00153 at 157.807 kb on + strand, within H281DRAFT_00153 at 157.808 kb on - strand, within H281DRAFT_00153 at 157.821 kb on + strand, within H281DRAFT_00153 at 157.821 kb on + strand, within H281DRAFT_00153 at 157.821 kb on + strand, within H281DRAFT_00153 at 157.821 kb on + strand, within H281DRAFT_00153 at 157.822 kb on - strand, within H281DRAFT_00153 at 157.822 kb on - strand, within H281DRAFT_00153 at 157.822 kb on - strand, within H281DRAFT_00153 at 157.822 kb on - strand, within H281DRAFT_00153 at 157.966 kb on + strand, within H281DRAFT_00153 at 157.967 kb on - strand, within H281DRAFT_00153 at 158.039 kb on + strand, within H281DRAFT_00153 at 158.047 kb on + strand, within H281DRAFT_00153 at 158.053 kb on + strand, within H281DRAFT_00153 at 158.053 kb on + strand, within H281DRAFT_00153 at 158.053 kb on + strand, within H281DRAFT_00153 at 158.054 kb on - strand, within H281DRAFT_00153 at 158.123 kb on - strand, within H281DRAFT_00153 at 158.123 kb on - strand, within H281DRAFT_00153 at 158.123 kb on - strand, within H281DRAFT_00153 at 158.130 kb on + strand, within H281DRAFT_00153 at 158.130 kb on + strand, within H281DRAFT_00153 at 158.131 kb on - strand, within H281DRAFT_00153 at 158.238 kb on + strand, within H281DRAFT_00153 at 158.239 kb on - strand, within H281DRAFT_00153 at 158.255 kb on - strand, within H281DRAFT_00153 at 158.283 kb on + strand, within H281DRAFT_00153 at 158.288 kb on - strand, within H281DRAFT_00153 at 158.338 kb on + strand, within H281DRAFT_00153 at 158.344 kb on + strand, within H281DRAFT_00153 at 158.344 kb on + strand, within H281DRAFT_00153 at 158.344 kb on + strand, within H281DRAFT_00153 at 158.344 kb on + strand, within H281DRAFT_00153 at 158.344 kb on + strand, within H281DRAFT_00153 at 158.345 kb on - strand, within H281DRAFT_00153 at 158.345 kb on - strand, within H281DRAFT_00153 at 158.345 kb on - strand, within H281DRAFT_00153 at 158.345 kb on - strand, within H281DRAFT_00153 at 158.345 kb on - strand, within H281DRAFT_00153 at 158.345 kb on - strand, within H281DRAFT_00153 at 158.359 kb on + strand, within H281DRAFT_00153 at 158.360 kb on - strand, within H281DRAFT_00153 at 158.504 kb on + strand, within H281DRAFT_00153 at 158.505 kb on - strand, within H281DRAFT_00153 at 158.615 kb on + strand, within H281DRAFT_00153 at 158.616 kb on - strand, within H281DRAFT_00153 at 158.698 kb on + strand, within H281DRAFT_00153 at 158.712 kb on + strand, within H281DRAFT_00153 at 158.713 kb on - strand, within H281DRAFT_00153 at 158.746 kb on + strand, within H281DRAFT_00153 at 158.746 kb on + strand, within H281DRAFT_00153 at 158.746 kb on + strand, within H281DRAFT_00153 at 158.746 kb on + strand, within H281DRAFT_00153 at 158.746 kb on + strand, within H281DRAFT_00153 at 158.747 kb on - strand, within H281DRAFT_00153 at 158.747 kb on - strand, within H281DRAFT_00153 at 158.747 kb on - strand, within H281DRAFT_00153 at 158.747 kb on - strand, within H281DRAFT_00153 at 158.771 kb on - strand, within H281DRAFT_00153 at 158.771 kb on - strand, within H281DRAFT_00153 at 158.771 kb on - strand, within H281DRAFT_00153 at 158.771 kb on - strand, within H281DRAFT_00153 at 158.771 kb on - strand, within H281DRAFT_00153 at 158.924 kb on - strand at 158.994 kb on + strand at 159.239 kb on + strand at 159.239 kb on + strand at 159.239 kb on + strand at 159.239 kb on + strand at 159.382 kb on + strand at 159.383 kb on - strand at 159.383 kb on - strand at 159.434 kb on + strand at 159.448 kb on + strand, within H281DRAFT_00154 at 159.735 kb on + strand, within H281DRAFT_00154 at 159.735 kb on + strand at 159.735 kb on + strand, within H281DRAFT_00154 at 159.736 kb on - strand, within H281DRAFT_00154 at 159.741 kb on - strand, within H281DRAFT_00154 at 159.769 kb on - strand, within H281DRAFT_00154
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 156,590 - -1.0 156,590 - -0.3 156,590 - +0.3 156,596 - H281DRAFT_00152 0.12 -1.5 156,741 - -0.1 156,755 - +1.2 156,755 - -0.6 156,837 - +0.3 157,017 + +0.4 157,018 - -0.1 157,044 + -0.1 157,044 + -0.8 157,045 - +1.2 157,176 + -0.5 157,176 + +1.2 157,177 - -1.1 157,177 - -1.4 157,188 + +2.5 157,200 + +0.1 157,201 - -0.4 157,201 - -0.7 157,201 - -0.5 157,312 + +0.6 157,312 + -0.1 157,312 + -0.8 157,477 + H281DRAFT_00153 0.15 -0.1 157,477 + H281DRAFT_00153 0.15 +0.9 157,478 - H281DRAFT_00153 0.15 +0.1 157,478 - H281DRAFT_00153 0.15 +0.2 157,478 - H281DRAFT_00153 0.15 -0.2 157,509 + H281DRAFT_00153 0.16 -1.1 157,509 + H281DRAFT_00153 0.16 +0.4 157,509 + H281DRAFT_00153 0.16 +0.6 157,569 + H281DRAFT_00153 0.20 -0.7 157,569 + H281DRAFT_00153 0.20 +0.4 157,569 + H281DRAFT_00153 0.20 +0.5 157,570 - H281DRAFT_00153 0.20 -1.0 157,570 - H281DRAFT_00153 0.20 -0.2 157,750 + H281DRAFT_00153 0.30 +0.4 157,751 - H281DRAFT_00153 0.30 -0.8 157,779 + H281DRAFT_00153 0.32 +0.5 157,779 + H281DRAFT_00153 0.32 +0.4 157,779 + H281DRAFT_00153 0.32 -0.3 157,807 + H281DRAFT_00153 0.33 -1.5 157,808 - H281DRAFT_00153 0.33 -0.8 157,821 + H281DRAFT_00153 0.34 -0.5 157,821 + H281DRAFT_00153 0.34 -0.3 157,821 + H281DRAFT_00153 0.34 +0.8 157,821 + H281DRAFT_00153 0.34 +0.5 157,822 - H281DRAFT_00153 0.34 +0.3 157,822 - H281DRAFT_00153 0.34 -0.1 157,822 - H281DRAFT_00153 0.34 -0.7 157,822 - H281DRAFT_00153 0.34 -1.0 157,966 + H281DRAFT_00153 0.42 -0.7 157,967 - H281DRAFT_00153 0.42 +0.4 158,039 + H281DRAFT_00153 0.47 -1.4 158,047 + H281DRAFT_00153 0.47 -0.8 158,053 + H281DRAFT_00153 0.47 -0.5 158,053 + H281DRAFT_00153 0.47 -1.1 158,053 + H281DRAFT_00153 0.47 -0.0 158,054 - H281DRAFT_00153 0.47 -0.6 158,123 - H281DRAFT_00153 0.51 -0.7 158,123 - H281DRAFT_00153 0.51 -0.5 158,123 - H281DRAFT_00153 0.51 +0.2 158,130 + H281DRAFT_00153 0.52 -0.0 158,130 + H281DRAFT_00153 0.52 -0.6 158,131 - H281DRAFT_00153 0.52 -0.5 158,238 + H281DRAFT_00153 0.58 +0.5 158,239 - H281DRAFT_00153 0.58 -0.1 158,255 - H281DRAFT_00153 0.59 -0.2 158,283 + H281DRAFT_00153 0.60 -0.6 158,288 - H281DRAFT_00153 0.61 -0.5 158,338 + H281DRAFT_00153 0.64 +1.5 158,344 + H281DRAFT_00153 0.64 +0.3 158,344 + H281DRAFT_00153 0.64 +0.4 158,344 + H281DRAFT_00153 0.64 +0.3 158,344 + H281DRAFT_00153 0.64 -0.5 158,344 + H281DRAFT_00153 0.64 +0.3 158,345 - H281DRAFT_00153 0.64 -1.5 158,345 - H281DRAFT_00153 0.64 -0.8 158,345 - H281DRAFT_00153 0.64 +0.6 158,345 - H281DRAFT_00153 0.64 -0.2 158,345 - H281DRAFT_00153 0.64 -1.6 158,345 - H281DRAFT_00153 0.64 -0.3 158,359 + H281DRAFT_00153 0.65 +1.3 158,360 - H281DRAFT_00153 0.65 +0.2 158,504 + H281DRAFT_00153 0.73 +0.6 158,505 - H281DRAFT_00153 0.73 -1.3 158,615 + H281DRAFT_00153 0.79 +0.4 158,616 - H281DRAFT_00153 0.79 -0.5 158,698 + H281DRAFT_00153 0.84 -0.5 158,712 + H281DRAFT_00153 0.85 +0.0 158,713 - H281DRAFT_00153 0.85 -0.8 158,746 + H281DRAFT_00153 0.87 +0.6 158,746 + H281DRAFT_00153 0.87 -0.0 158,746 + H281DRAFT_00153 0.87 +0.1 158,746 + H281DRAFT_00153 0.87 +1.2 158,746 + H281DRAFT_00153 0.87 -0.0 158,747 - H281DRAFT_00153 0.87 -0.6 158,747 - H281DRAFT_00153 0.87 -0.7 158,747 - H281DRAFT_00153 0.87 -0.8 158,747 - H281DRAFT_00153 0.87 -1.1 158,771 - H281DRAFT_00153 0.88 -0.4 158,771 - H281DRAFT_00153 0.88 +0.6 158,771 - H281DRAFT_00153 0.88 -0.1 158,771 - H281DRAFT_00153 0.88 +1.7 158,771 - H281DRAFT_00153 0.88 +0.0 158,924 - -0.5 158,994 + +0.9 159,239 + -0.0 159,239 + +0.2 159,239 + +1.1 159,239 + -1.0 159,382 + -0.5 159,383 - -0.2 159,383 - -0.3 159,434 + -0.3 159,448 + H281DRAFT_00154 0.10 -1.0 159,735 + H281DRAFT_00154 0.17 +0.1 159,735 + +0.9 159,735 + H281DRAFT_00154 0.17 +0.7 159,736 - H281DRAFT_00154 0.17 -1.0 159,741 - H281DRAFT_00154 0.17 -1.2 159,769 - H281DRAFT_00154 0.17 +1.5
Or see this region's nucleotide sequence