Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0686

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0685 and Ga0059261_0686 are separated by 156 nucleotidesGa0059261_0686 and Ga0059261_0687 are separated by 8 nucleotidesGa0059261_0687 and Ga0059261_0688 are separated by 204 nucleotidesGa0059261_0688 and Ga0059261_0689 are separated by 37 nucleotides Ga0059261_0685: Ga0059261_0685 - pyruvate kinase, at 724,347 to 725,798 _0685 Ga0059261_0686: Ga0059261_0686 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 725,955 to 726,572 _0686 Ga0059261_0687: Ga0059261_0687 - Ribosomal protein L36, at 726,581 to 726,706 _0687 Ga0059261_0688: Ga0059261_0688 - Domain of unknown function (DUF4136), at 726,911 to 727,510 _0688 Ga0059261_0689: Ga0059261_0689 - Predicted carboxypeptidase, at 727,548 to 728,666 _0689 Position (kb) 725 726 727Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 725.259 kb on + strand, within Ga0059261_0685at 725.259 kb on + strand, within Ga0059261_0685at 725.260 kb on - strand, within Ga0059261_0685at 725.882 kb on + strandat 725.882 kb on + strandat 725.882 kb on + strandat 725.882 kb on + strandat 725.883 kb on - strandat 725.883 kb on - strandat 725.937 kb on + strandat 725.937 kb on + strandat 725.937 kb on + strandat 725.937 kb on + strandat 725.938 kb on - strandat 725.938 kb on - strandat 725.938 kb on - strandat 725.939 kb on + strandat 725.939 kb on + strandat 725.939 kb on + strandat 725.940 kb on - strandat 725.940 kb on - strandat 725.940 kb on - strandat 726.051 kb on + strand, within Ga0059261_0686at 726.051 kb on + strand, within Ga0059261_0686at 726.051 kb on + strand, within Ga0059261_0686at 726.051 kb on + strand, within Ga0059261_0686at 726.051 kb on + strand, within Ga0059261_0686at 726.052 kb on - strand, within Ga0059261_0686at 726.052 kb on - strand, within Ga0059261_0686at 726.052 kb on - strand, within Ga0059261_0686at 726.052 kb on - strand, within Ga0059261_0686at 726.052 kb on - strandat 726.052 kb on - strand, within Ga0059261_0686at 726.124 kb on + strand, within Ga0059261_0686at 726.124 kb on + strand, within Ga0059261_0686at 726.124 kb on + strand, within Ga0059261_0686at 726.124 kb on + strand, within Ga0059261_0686at 726.124 kb on + strand, within Ga0059261_0686at 726.124 kb on + strand, within Ga0059261_0686at 726.124 kb on + strand, within Ga0059261_0686at 726.124 kb on + strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.374 kb on - strand, within Ga0059261_0686at 726.374 kb on - strand, within Ga0059261_0686at 726.446 kb on - strand, within Ga0059261_0686at 726.503 kb on - strand, within Ga0059261_0686at 726.551 kb on + strandat 726.552 kb on - strandat 726.552 kb on - strandat 726.855 kb on + strandat 726.856 kb on - strandat 726.860 kb on - strandat 727.014 kb on - strand, within Ga0059261_0688at 727.051 kb on + strand, within Ga0059261_0688at 727.053 kb on + strand, within Ga0059261_0688at 727.053 kb on + strand, within Ga0059261_0688at 727.054 kb on - strand, within Ga0059261_0688at 727.054 kb on - strand, within Ga0059261_0688at 727.054 kb on - strand, within Ga0059261_0688at 727.097 kb on + strand, within Ga0059261_0688at 727.097 kb on + strand, within Ga0059261_0688at 727.097 kb on + strand, within Ga0059261_0688at 727.097 kb on + strand, within Ga0059261_0688at 727.098 kb on - strand, within Ga0059261_0688at 727.098 kb on - strand, within Ga0059261_0688at 727.169 kb on + strand, within Ga0059261_0688at 727.169 kb on + strand, within Ga0059261_0688at 727.170 kb on - strand, within Ga0059261_0688at 727.170 kb on - strand, within Ga0059261_0688at 727.189 kb on + strand, within Ga0059261_0688at 727.322 kb on + strand, within Ga0059261_0688at 727.322 kb on + strand, within Ga0059261_0688at 727.322 kb on + strand, within Ga0059261_0688at 727.323 kb on - strand, within Ga0059261_0688at 727.323 kb on - strand, within Ga0059261_0688at 727.323 kb on - strand, within Ga0059261_0688at 727.323 kb on - strand, within Ga0059261_0688at 727.323 kb on - strand, within Ga0059261_0688at 727.366 kb on + strand, within Ga0059261_0688at 727.366 kb on + strand, within Ga0059261_0688at 727.508 kb on + strandat 727.508 kb on + strandat 727.508 kb on + strandat 727.508 kb on + strandat 727.509 kb on - strandat 727.509 kb on - strandat 727.509 kb on - strandat 727.509 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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725,259 + Ga0059261_0685 0.63 -1.0
725,259 + Ga0059261_0685 0.63 -0.8
725,260 - Ga0059261_0685 0.63 -0.4
725,882 + -0.2
725,882 + -0.7
725,882 + +0.5
725,882 + +0.2
725,883 - -0.0
725,883 - -0.4
725,937 + -1.6
725,937 + -0.2
725,937 + -0.5
725,937 + -0.0
725,938 - +0.9
725,938 - -0.2
725,938 - -0.2
725,939 + +0.3
725,939 + +0.1
725,939 + -0.1
725,940 - -0.3
725,940 - +0.1
725,940 - +0.4
726,051 + Ga0059261_0686 0.16 +0.7
726,051 + Ga0059261_0686 0.16 +0.3
726,051 + Ga0059261_0686 0.16 -0.1
726,051 + Ga0059261_0686 0.16 +0.3
726,051 + Ga0059261_0686 0.16 +0.5
726,052 - Ga0059261_0686 0.16 +0.5
726,052 - Ga0059261_0686 0.16 -0.4
726,052 - Ga0059261_0686 0.16 +1.3
726,052 - Ga0059261_0686 0.16 +0.5
726,052 - +2.0
726,052 - Ga0059261_0686 0.16 +0.0
726,124 + Ga0059261_0686 0.27 +0.4
726,124 + Ga0059261_0686 0.27 -0.8
726,124 + Ga0059261_0686 0.27 -0.1
726,124 + Ga0059261_0686 0.27 +0.6
726,124 + Ga0059261_0686 0.27 +0.4
726,124 + Ga0059261_0686 0.27 +1.0
726,124 + Ga0059261_0686 0.27 +0.7
726,124 + Ga0059261_0686 0.27 +1.0
726,125 - Ga0059261_0686 0.28 +0.6
726,125 - Ga0059261_0686 0.28 +0.4
726,125 - Ga0059261_0686 0.28 +0.1
726,125 - Ga0059261_0686 0.28 +0.3
726,125 - Ga0059261_0686 0.28 -0.5
726,125 - Ga0059261_0686 0.28 +0.7
726,125 - Ga0059261_0686 0.28 -0.4
726,125 - Ga0059261_0686 0.28 +0.5
726,125 - Ga0059261_0686 0.28 +0.1
726,125 - Ga0059261_0686 0.28 +0.2
726,125 - Ga0059261_0686 0.28 -1.0
726,125 - Ga0059261_0686 0.28 +1.1
726,374 - Ga0059261_0686 0.68 -0.2
726,374 - Ga0059261_0686 0.68 +0.4
726,446 - Ga0059261_0686 0.79 +0.2
726,503 - Ga0059261_0686 0.89 +0.2
726,551 + +1.3
726,552 - -0.1
726,552 - +1.1
726,855 + -0.4
726,856 - +0.3
726,860 - -0.4
727,014 - Ga0059261_0688 0.17 +0.1
727,051 + Ga0059261_0688 0.23 -0.6
727,053 + Ga0059261_0688 0.24 +0.1
727,053 + Ga0059261_0688 0.24 -0.2
727,054 - Ga0059261_0688 0.24 +0.5
727,054 - Ga0059261_0688 0.24 +0.2
727,054 - Ga0059261_0688 0.24 -0.5
727,097 + Ga0059261_0688 0.31 -0.7
727,097 + Ga0059261_0688 0.31 -0.3
727,097 + Ga0059261_0688 0.31 -0.2
727,097 + Ga0059261_0688 0.31 -1.2
727,098 - Ga0059261_0688 0.31 -0.5
727,098 - Ga0059261_0688 0.31 -2.8
727,169 + Ga0059261_0688 0.43 -0.5
727,169 + Ga0059261_0688 0.43 -0.4
727,170 - Ga0059261_0688 0.43 +0.6
727,170 - Ga0059261_0688 0.43 -0.6
727,189 + Ga0059261_0688 0.46 +0.1
727,322 + Ga0059261_0688 0.69 -0.3
727,322 + Ga0059261_0688 0.69 -1.5
727,322 + Ga0059261_0688 0.69 +0.1
727,323 - Ga0059261_0688 0.69 -0.2
727,323 - Ga0059261_0688 0.69 +0.3
727,323 - Ga0059261_0688 0.69 -0.6
727,323 - Ga0059261_0688 0.69 +1.0
727,323 - Ga0059261_0688 0.69 -0.5
727,366 + Ga0059261_0688 0.76 +0.5
727,366 + Ga0059261_0688 0.76 -0.4
727,508 + -0.0
727,508 + -0.0
727,508 + -0.3
727,508 + +0.7
727,509 - -2.1
727,509 - +0.6
727,509 - +0.1
727,509 - -0.1

Or see this region's nucleotide sequence