Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0655 and Ga0059261_0656 are separated by 52 nucleotides Ga0059261_0656 and Ga0059261_0657 are separated by 17 nucleotides Ga0059261_0657 and Ga0059261_0658 are separated by 119 nucleotides
Ga0059261_0655: Ga0059261_0655 - Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/Hpt domain/CheW-like domain/Signal transducing histidine kinase, homodimeric domain, at 694,410 to 696,713
_0655
Ga0059261_0656: Ga0059261_0656 - Predicted dehydrogenases and related proteins, at 696,766 to 697,797
_0656
Ga0059261_0657: Ga0059261_0657 - Uncharacterized protein conserved in bacteria, at 697,815 to 698,459
_0657
Ga0059261_0658: Ga0059261_0658 - Beta-lactamase class C and other penicillin binding proteins, at 698,579 to 699,859
_0658
Position (kb) 696
697
698 Strain fitness (log2 ratio) -2
-1
0
1 at 696.060 kb on - strand, within Ga0059261_0655 at 696.581 kb on + strand at 696.582 kb on - strand at 696.757 kb on - strand at 696.757 kb on - strand at 696.757 kb on - strand at 696.757 kb on - strand at 696.763 kb on + strand at 696.763 kb on + strand at 696.763 kb on + strand at 696.763 kb on + strand at 696.763 kb on + strand at 696.763 kb on + strand at 696.763 kb on + strand at 696.763 kb on + strand at 696.763 kb on + strand at 696.764 kb on - strand at 696.764 kb on - strand at 696.764 kb on - strand at 696.764 kb on - strand at 696.764 kb on - strand at 696.764 kb on - strand at 696.767 kb on + strand at 696.767 kb on + strand at 696.768 kb on - strand at 696.921 kb on - strand, within Ga0059261_0656 at 696.921 kb on - strand, within Ga0059261_0656 at 696.921 kb on - strand, within Ga0059261_0656 at 696.921 kb on - strand, within Ga0059261_0656 at 697.175 kb on + strand, within Ga0059261_0656 at 697.175 kb on + strand, within Ga0059261_0656 at 697.733 kb on + strand at 697.733 kb on + strand at 697.733 kb on + strand at 697.733 kb on + strand at 697.733 kb on + strand at 697.734 kb on - strand at 697.734 kb on - strand at 697.734 kb on - strand at 697.734 kb on - strand at 697.766 kb on + strand at 697.916 kb on - strand, within Ga0059261_0657 at 698.547 kb on + strand at 698.783 kb on + strand, within Ga0059261_0658 at 698.783 kb on + strand, within Ga0059261_0658 at 698.783 kb on + strand, within Ga0059261_0658 at 698.784 kb on - strand, within Ga0059261_0658 at 698.784 kb on - strand, within Ga0059261_0658 at 698.784 kb on - strand, within Ga0059261_0658 at 698.784 kb on - strand, within Ga0059261_0658 at 698.784 kb on - strand, within Ga0059261_0658 at 698.784 kb on - strand, within Ga0059261_0658 at 698.784 kb on - strand, within Ga0059261_0658 at 698.784 kb on - strand, within Ga0059261_0658 at 698.784 kb on - strand, within Ga0059261_0658 at 698.786 kb on + strand, within Ga0059261_0658 at 698.786 kb on + strand, within Ga0059261_0658 at 698.786 kb on + strand, within Ga0059261_0658 at 698.786 kb on + strand, within Ga0059261_0658 at 698.787 kb on - strand, within Ga0059261_0658
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 696,060 - Ga0059261_0655 0.72 +0.3 696,581 + +0.3 696,582 - -0.0 696,757 - -0.8 696,757 - +0.1 696,757 - -1.2 696,757 - +0.3 696,763 + +0.1 696,763 + -0.4 696,763 + -0.4 696,763 + -0.2 696,763 + -0.2 696,763 + +0.3 696,763 + +0.1 696,763 + +0.1 696,763 + +1.1 696,764 - -2.1 696,764 - -0.4 696,764 - +0.5 696,764 - -0.0 696,764 - +0.3 696,764 - +0.4 696,767 + -0.0 696,767 + -1.3 696,768 - +0.1 696,921 - Ga0059261_0656 0.15 +0.9 696,921 - Ga0059261_0656 0.15 -1.2 696,921 - Ga0059261_0656 0.15 +0.3 696,921 - Ga0059261_0656 0.15 +0.6 697,175 + Ga0059261_0656 0.40 -0.1 697,175 + Ga0059261_0656 0.40 +0.9 697,733 + -1.5 697,733 + -0.1 697,733 + -0.3 697,733 + +1.2 697,733 + -0.3 697,734 - +0.7 697,734 - +0.5 697,734 - -0.0 697,734 - +0.1 697,766 + +0.2 697,916 - Ga0059261_0657 0.16 +1.4 698,547 + +0.8 698,783 + Ga0059261_0658 0.16 +0.6 698,783 + Ga0059261_0658 0.16 -0.3 698,783 + Ga0059261_0658 0.16 -0.2 698,784 - Ga0059261_0658 0.16 -0.9 698,784 - Ga0059261_0658 0.16 +0.1 698,784 - Ga0059261_0658 0.16 -0.3 698,784 - Ga0059261_0658 0.16 +0.4 698,784 - Ga0059261_0658 0.16 +0.1 698,784 - Ga0059261_0658 0.16 -0.1 698,784 - Ga0059261_0658 0.16 +0.3 698,784 - Ga0059261_0658 0.16 -0.5 698,784 - Ga0059261_0658 0.16 -0.4 698,786 + Ga0059261_0658 0.16 +0.5 698,786 + Ga0059261_0658 0.16 -0.7 698,786 + Ga0059261_0658 0.16 -0.3 698,786 + Ga0059261_0658 0.16 +0.4 698,787 - Ga0059261_0658 0.16 +0.3
Or see this region's nucleotide sequence