Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0578

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0577 and Ga0059261_0578 are separated by 157 nucleotidesGa0059261_0578 and Ga0059261_0579 overlap by 4 nucleotides Ga0059261_0577: Ga0059261_0577 - transcriptional regulator, LacI family, at 603,454 to 604,434 _0577 Ga0059261_0578: Ga0059261_0578 - Major Facilitator Superfamily, at 604,592 to 605,818 _0578 Ga0059261_0579: Ga0059261_0579 - Neutral trehalase, at 605,815 to 607,302 _0579 Position (kb) 604 605 606Strain fitness (log2 ratio) -2 -1 0 1 2at 603.917 kb on - strand, within Ga0059261_0577at 603.917 kb on - strand, within Ga0059261_0577at 603.917 kb on - strand, within Ga0059261_0577at 603.968 kb on - strand, within Ga0059261_0577at 603.988 kb on - strand, within Ga0059261_0577at 603.988 kb on - strand, within Ga0059261_0577at 604.029 kb on - strand, within Ga0059261_0577at 604.029 kb on - strand, within Ga0059261_0577at 604.029 kb on - strand, within Ga0059261_0577at 604.034 kb on + strand, within Ga0059261_0577at 604.039 kb on + strand, within Ga0059261_0577at 604.039 kb on + strand, within Ga0059261_0577at 604.039 kb on + strandat 604.039 kb on + strand, within Ga0059261_0577at 604.039 kb on + strand, within Ga0059261_0577at 604.040 kb on - strand, within Ga0059261_0577at 604.040 kb on - strand, within Ga0059261_0577at 604.040 kb on - strand, within Ga0059261_0577at 604.040 kb on - strand, within Ga0059261_0577at 604.080 kb on + strand, within Ga0059261_0577at 604.090 kb on + strand, within Ga0059261_0577at 604.090 kb on + strand, within Ga0059261_0577at 604.090 kb on + strand, within Ga0059261_0577at 604.091 kb on - strand, within Ga0059261_0577at 604.091 kb on - strand, within Ga0059261_0577at 604.104 kb on - strand, within Ga0059261_0577at 604.144 kb on + strand, within Ga0059261_0577at 604.144 kb on + strand, within Ga0059261_0577at 604.144 kb on + strand, within Ga0059261_0577at 604.144 kb on + strand, within Ga0059261_0577at 604.252 kb on + strand, within Ga0059261_0577at 604.253 kb on - strand, within Ga0059261_0577at 604.267 kb on + strand, within Ga0059261_0577at 604.267 kb on + strand, within Ga0059261_0577at 604.347 kb on - strandat 604.487 kb on - strandat 604.493 kb on - strandat 604.494 kb on + strandat 604.494 kb on + strandat 604.495 kb on - strandat 604.506 kb on + strandat 604.507 kb on - strandat 604.507 kb on - strandat 604.631 kb on + strandat 604.631 kb on + strandat 604.631 kb on + strandat 604.632 kb on - strandat 604.632 kb on - strandat 604.934 kb on + strand, within Ga0059261_0578at 604.934 kb on + strand, within Ga0059261_0578at 604.934 kb on + strand, within Ga0059261_0578at 604.934 kb on + strand, within Ga0059261_0578at 604.935 kb on - strand, within Ga0059261_0578at 604.935 kb on - strand, within Ga0059261_0578at 604.935 kb on - strand, within Ga0059261_0578at 604.935 kb on - strand, within Ga0059261_0578at 605.090 kb on + strand, within Ga0059261_0578at 605.091 kb on - strand, within Ga0059261_0578at 605.091 kb on - strand, within Ga0059261_0578at 605.130 kb on + strand, within Ga0059261_0578at 605.140 kb on + strand, within Ga0059261_0578at 605.140 kb on + strand, within Ga0059261_0578at 605.261 kb on + strand, within Ga0059261_0578at 605.261 kb on + strand, within Ga0059261_0578at 605.262 kb on - strand, within Ga0059261_0578at 605.262 kb on - strand, within Ga0059261_0578at 605.262 kb on - strand, within Ga0059261_0578at 605.262 kb on - strand, within Ga0059261_0578at 605.262 kb on - strand, within Ga0059261_0578at 605.283 kb on + strand, within Ga0059261_0578at 605.283 kb on + strand, within Ga0059261_0578at 605.284 kb on - strand, within Ga0059261_0578at 605.406 kb on + strand, within Ga0059261_0578at 605.406 kb on + strand, within Ga0059261_0578at 605.407 kb on - strand, within Ga0059261_0578at 605.543 kb on + strand, within Ga0059261_0578at 605.543 kb on + strand, within Ga0059261_0578at 605.543 kb on + strand, within Ga0059261_0578at 605.543 kb on + strand, within Ga0059261_0578at 605.543 kb on + strand, within Ga0059261_0578at 605.543 kb on + strand, within Ga0059261_0578at 605.544 kb on - strand, within Ga0059261_0578at 605.544 kb on - strand, within Ga0059261_0578at 605.544 kb on - strand, within Ga0059261_0578at 605.583 kb on - strand, within Ga0059261_0578at 605.583 kb on - strand, within Ga0059261_0578at 605.738 kb on + strandat 605.738 kb on + strandat 605.739 kb on - strandat 605.739 kb on - strandat 605.981 kb on + strand, within Ga0059261_0579at 605.982 kb on - strand, within Ga0059261_0579at 605.982 kb on - strand, within Ga0059261_0579at 606.063 kb on + strand, within Ga0059261_0579at 606.063 kb on + strand, within Ga0059261_0579at 606.063 kb on + strand, within Ga0059261_0579at 606.063 kb on + strand, within Ga0059261_0579at 606.063 kb on + strand, within Ga0059261_0579at 606.063 kb on + strand, within Ga0059261_0579at 606.064 kb on - strand, within Ga0059261_0579at 606.064 kb on - strand, within Ga0059261_0579at 606.064 kb on - strand, within Ga0059261_0579at 606.064 kb on - strand, within Ga0059261_0579at 606.064 kb on - strand, within Ga0059261_0579at 606.064 kb on - strand, within Ga0059261_0579at 606.152 kb on + strand, within Ga0059261_0579at 606.178 kb on + strand, within Ga0059261_0579at 606.178 kb on + strand, within Ga0059261_0579at 606.178 kb on + strand, within Ga0059261_0579at 606.178 kb on + strand, within Ga0059261_0579at 606.181 kb on + strand, within Ga0059261_0579at 606.182 kb on - strand, within Ga0059261_0579at 606.182 kb on - strand, within Ga0059261_0579at 606.193 kb on + strand, within Ga0059261_0579at 606.193 kb on + strand, within Ga0059261_0579at 606.193 kb on + strand, within Ga0059261_0579at 606.194 kb on - strand, within Ga0059261_0579at 606.194 kb on - strand, within Ga0059261_0579at 606.194 kb on - strand, within Ga0059261_0579at 606.194 kb on - strand, within Ga0059261_0579at 606.246 kb on + strand, within Ga0059261_0579at 606.247 kb on - strand, within Ga0059261_0579at 606.247 kb on - strand, within Ga0059261_0579at 606.247 kb on - strand, within Ga0059261_0579at 606.310 kb on + strand, within Ga0059261_0579at 606.310 kb on + strand, within Ga0059261_0579at 606.310 kb on + strand, within Ga0059261_0579at 606.310 kb on + strand, within Ga0059261_0579at 606.310 kb on + strand, within Ga0059261_0579at 606.311 kb on - strand, within Ga0059261_0579at 606.311 kb on - strand, within Ga0059261_0579at 606.311 kb on - strand, within Ga0059261_0579at 606.313 kb on + strand, within Ga0059261_0579at 606.313 kb on + strand, within Ga0059261_0579at 606.313 kb on + strand, within Ga0059261_0579at 606.343 kb on + strand, within Ga0059261_0579at 606.343 kb on + strand, within Ga0059261_0579at 606.343 kb on + strand, within Ga0059261_0579at 606.344 kb on - strand, within Ga0059261_0579at 606.511 kb on + strand, within Ga0059261_0579at 606.511 kb on + strand, within Ga0059261_0579at 606.511 kb on + strand, within Ga0059261_0579at 606.511 kb on + strand, within Ga0059261_0579at 606.558 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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603,917 - Ga0059261_0577 0.47 +0.2
603,917 - Ga0059261_0577 0.47 -0.3
603,917 - Ga0059261_0577 0.47 -0.3
603,968 - Ga0059261_0577 0.52 +0.1
603,988 - Ga0059261_0577 0.54 +0.5
603,988 - Ga0059261_0577 0.54 -0.5
604,029 - Ga0059261_0577 0.59 -0.5
604,029 - Ga0059261_0577 0.59 -0.3
604,029 - Ga0059261_0577 0.59 -0.2
604,034 + Ga0059261_0577 0.59 -0.5
604,039 + Ga0059261_0577 0.60 +0.3
604,039 + Ga0059261_0577 0.60 +0.1
604,039 + -0.4
604,039 + Ga0059261_0577 0.60 -0.4
604,039 + Ga0059261_0577 0.60 -0.4
604,040 - Ga0059261_0577 0.60 -0.2
604,040 - Ga0059261_0577 0.60 -1.0
604,040 - Ga0059261_0577 0.60 -1.4
604,040 - Ga0059261_0577 0.60 -0.6
604,080 + Ga0059261_0577 0.64 -0.3
604,090 + Ga0059261_0577 0.65 -0.6
604,090 + Ga0059261_0577 0.65 +0.2
604,090 + Ga0059261_0577 0.65 -0.1
604,091 - Ga0059261_0577 0.65 -1.5
604,091 - Ga0059261_0577 0.65 -0.9
604,104 - Ga0059261_0577 0.66 +0.5
604,144 + Ga0059261_0577 0.70 -0.5
604,144 + Ga0059261_0577 0.70 +0.2
604,144 + Ga0059261_0577 0.70 -0.8
604,144 + Ga0059261_0577 0.70 -1.2
604,252 + Ga0059261_0577 0.81 -0.2
604,253 - Ga0059261_0577 0.81 -0.1
604,267 + Ga0059261_0577 0.83 -1.1
604,267 + Ga0059261_0577 0.83 -0.2
604,347 - +0.0
604,487 - +0.7
604,493 - +1.0
604,494 + +0.3
604,494 + +0.3
604,495 - +0.8
604,506 + +0.8
604,507 - -1.0
604,507 - +0.7
604,631 + +0.8
604,631 + +0.3
604,631 + +0.5
604,632 - +0.1
604,632 - -0.5
604,934 + Ga0059261_0578 0.28 +0.7
604,934 + Ga0059261_0578 0.28 +0.1
604,934 + Ga0059261_0578 0.28 +0.9
604,934 + Ga0059261_0578 0.28 +0.4
604,935 - Ga0059261_0578 0.28 +0.3
604,935 - Ga0059261_0578 0.28 +0.2
604,935 - Ga0059261_0578 0.28 +0.8
604,935 - Ga0059261_0578 0.28 +0.3
605,090 + Ga0059261_0578 0.41 +0.5
605,091 - Ga0059261_0578 0.41 +0.2
605,091 - Ga0059261_0578 0.41 -0.1
605,130 + Ga0059261_0578 0.44 +1.8
605,140 + Ga0059261_0578 0.45 +0.3
605,140 + Ga0059261_0578 0.45 +1.6
605,261 + Ga0059261_0578 0.55 +0.6
605,261 + Ga0059261_0578 0.55 +0.4
605,262 - Ga0059261_0578 0.55 +0.1
605,262 - Ga0059261_0578 0.55 +1.1
605,262 - Ga0059261_0578 0.55 -0.2
605,262 - Ga0059261_0578 0.55 +1.0
605,262 - Ga0059261_0578 0.55 -0.5
605,283 + Ga0059261_0578 0.56 +0.2
605,283 + Ga0059261_0578 0.56 +0.0
605,284 - Ga0059261_0578 0.56 +0.4
605,406 + Ga0059261_0578 0.66 +0.2
605,406 + Ga0059261_0578 0.66 +0.8
605,407 - Ga0059261_0578 0.66 +0.5
605,543 + Ga0059261_0578 0.78 +1.2
605,543 + Ga0059261_0578 0.78 +0.2
605,543 + Ga0059261_0578 0.78 +0.1
605,543 + Ga0059261_0578 0.78 +0.7
605,543 + Ga0059261_0578 0.78 -0.2
605,543 + Ga0059261_0578 0.78 +0.1
605,544 - Ga0059261_0578 0.78 +0.3
605,544 - Ga0059261_0578 0.78 +0.6
605,544 - Ga0059261_0578 0.78 +0.9
605,583 - Ga0059261_0578 0.81 +0.7
605,583 - Ga0059261_0578 0.81 +0.1
605,738 + +0.5
605,738 + -0.3
605,739 - -0.4
605,739 - -0.2
605,981 + Ga0059261_0579 0.11 +0.1
605,982 - Ga0059261_0579 0.11 -0.2
605,982 - Ga0059261_0579 0.11 +0.4
606,063 + Ga0059261_0579 0.17 -0.1
606,063 + Ga0059261_0579 0.17 +0.5
606,063 + Ga0059261_0579 0.17 -0.4
606,063 + Ga0059261_0579 0.17 +0.6
606,063 + Ga0059261_0579 0.17 -0.3
606,063 + Ga0059261_0579 0.17 -0.9
606,064 - Ga0059261_0579 0.17 +1.0
606,064 - Ga0059261_0579 0.17 -1.4
606,064 - Ga0059261_0579 0.17 +0.4
606,064 - Ga0059261_0579 0.17 -0.7
606,064 - Ga0059261_0579 0.17 +0.4
606,064 - Ga0059261_0579 0.17 -0.1
606,152 + Ga0059261_0579 0.23 -0.8
606,178 + Ga0059261_0579 0.24 -0.3
606,178 + Ga0059261_0579 0.24 -0.0
606,178 + Ga0059261_0579 0.24 -1.0
606,178 + Ga0059261_0579 0.24 -0.5
606,181 + Ga0059261_0579 0.25 +0.0
606,182 - Ga0059261_0579 0.25 -0.4
606,182 - Ga0059261_0579 0.25 -0.2
606,193 + Ga0059261_0579 0.25 -0.3
606,193 + Ga0059261_0579 0.25 -1.0
606,193 + Ga0059261_0579 0.25 -0.8
606,194 - Ga0059261_0579 0.25 -1.8
606,194 - Ga0059261_0579 0.25 -0.3
606,194 - Ga0059261_0579 0.25 -1.1
606,194 - Ga0059261_0579 0.25 +0.0
606,246 + Ga0059261_0579 0.29 -0.6
606,247 - Ga0059261_0579 0.29 -1.2
606,247 - Ga0059261_0579 0.29 -0.2
606,247 - Ga0059261_0579 0.29 +0.6
606,310 + Ga0059261_0579 0.33 +0.6
606,310 + Ga0059261_0579 0.33 -0.0
606,310 + Ga0059261_0579 0.33 -0.0
606,310 + Ga0059261_0579 0.33 -0.1
606,310 + Ga0059261_0579 0.33 -0.9
606,311 - Ga0059261_0579 0.33 -0.4
606,311 - Ga0059261_0579 0.33 -0.6
606,311 - Ga0059261_0579 0.33 +0.3
606,313 + Ga0059261_0579 0.33 -0.3
606,313 + Ga0059261_0579 0.33 -0.5
606,313 + Ga0059261_0579 0.33 -0.4
606,343 + Ga0059261_0579 0.35 -0.5
606,343 + Ga0059261_0579 0.35 -1.0
606,343 + Ga0059261_0579 0.35 +0.1
606,344 - Ga0059261_0579 0.36 -0.9
606,511 + Ga0059261_0579 0.47 -0.7
606,511 + Ga0059261_0579 0.47 +0.3
606,511 + Ga0059261_0579 0.47 -0.4
606,511 + Ga0059261_0579 0.47 -0.7
606,558 + +0.4

Or see this region's nucleotide sequence