Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0302

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0300 and Ga0059261_0301 are separated by 185 nucleotidesGa0059261_0301 and Ga0059261_0302 are separated by 27 nucleotidesGa0059261_0302 and Ga0059261_0303 are separated by 49 nucleotides Ga0059261_0300: Ga0059261_0300 - diguanylate cyclase (GGDEF) domain, at 284,594 to 286,126 _0300 Ga0059261_0301: Ga0059261_0301 - hypothetical protein, at 286,312 to 286,719 _0301 Ga0059261_0302: Ga0059261_0302 - hypothetical protein, at 286,747 to 287,184 _0302 Ga0059261_0303: Ga0059261_0303 - Predicted membrane protein, at 287,234 to 288,484 _0303 Position (kb) 286 287 288Strain fitness (log2 ratio) -1 0 1 2 3at 285.753 kb on + strand, within Ga0059261_0300at 285.753 kb on + strand, within Ga0059261_0300at 285.753 kb on + strand, within Ga0059261_0300at 285.754 kb on - strand, within Ga0059261_0300at 285.754 kb on - strand, within Ga0059261_0300at 285.967 kb on + strandat 286.138 kb on + strandat 286.138 kb on + strandat 286.138 kb on + strandat 286.139 kb on - strandat 286.139 kb on - strandat 286.139 kb on - strandat 286.148 kb on + strandat 286.148 kb on + strandat 286.149 kb on - strandat 286.149 kb on - strandat 286.152 kb on + strandat 286.152 kb on + strandat 286.153 kb on - strandat 286.153 kb on - strandat 286.153 kb on - strandat 286.153 kb on - strandat 286.153 kb on - strandat 286.163 kb on + strandat 286.191 kb on + strandat 286.258 kb on + strandat 286.324 kb on + strandat 286.389 kb on + strand, within Ga0059261_0301at 286.390 kb on - strand, within Ga0059261_0301at 286.431 kb on - strand, within Ga0059261_0301at 286.599 kb on + strand, within Ga0059261_0301at 286.599 kb on + strand, within Ga0059261_0301at 286.599 kb on + strand, within Ga0059261_0301at 286.600 kb on - strand, within Ga0059261_0301at 286.602 kb on - strand, within Ga0059261_0301at 286.602 kb on - strand, within Ga0059261_0301at 286.602 kb on - strand, within Ga0059261_0301at 286.611 kb on + strand, within Ga0059261_0301at 286.611 kb on + strand, within Ga0059261_0301at 286.611 kb on + strand, within Ga0059261_0301at 286.612 kb on - strand, within Ga0059261_0301at 286.612 kb on - strand, within Ga0059261_0301at 286.612 kb on - strand, within Ga0059261_0301at 286.612 kb on - strand, within Ga0059261_0301at 286.612 kb on - strand, within Ga0059261_0301at 286.721 kb on + strandat 286.722 kb on - strandat 286.722 kb on - strandat 286.722 kb on - strandat 286.870 kb on + strand, within Ga0059261_0302at 286.870 kb on + strand, within Ga0059261_0302at 286.871 kb on - strand, within Ga0059261_0302at 286.871 kb on - strand, within Ga0059261_0302at 287.023 kb on + strand, within Ga0059261_0302at 287.038 kb on + strand, within Ga0059261_0302at 287.038 kb on + strand, within Ga0059261_0302at 287.039 kb on - strand, within Ga0059261_0302at 287.053 kb on + strand, within Ga0059261_0302at 287.053 kb on + strand, within Ga0059261_0302at 287.053 kb on + strand, within Ga0059261_0302at 287.053 kb on + strand, within Ga0059261_0302at 287.053 kb on + strand, within Ga0059261_0302at 287.053 kb on + strand, within Ga0059261_0302at 287.053 kb on + strand, within Ga0059261_0302at 287.053 kb on + strand, within Ga0059261_0302at 287.053 kb on + strand, within Ga0059261_0302at 287.054 kb on - strand, within Ga0059261_0302at 287.054 kb on - strand, within Ga0059261_0302at 287.054 kb on - strand, within Ga0059261_0302at 287.054 kb on - strand, within Ga0059261_0302at 287.054 kb on - strand, within Ga0059261_0302at 287.054 kb on - strand, within Ga0059261_0302at 287.054 kb on - strand, within Ga0059261_0302at 287.078 kb on + strand, within Ga0059261_0302at 287.078 kb on + strand, within Ga0059261_0302at 287.079 kb on - strand, within Ga0059261_0302at 287.182 kb on + strandat 287.182 kb on + strandat 287.183 kb on - strandat 287.183 kb on - strandat 287.183 kb on - strandat 287.205 kb on + strandat 287.205 kb on + strandat 287.205 kb on + strandat 287.206 kb on - strandat 287.219 kb on + strandat 287.219 kb on + strandat 287.219 kb on + strandat 287.257 kb on + strandat 287.257 kb on + strandat 287.257 kb on + strandat 287.257 kb on + strandat 287.258 kb on - strandat 287.273 kb on - strandat 287.345 kb on + strandat 287.345 kb on + strandat 287.345 kb on + strandat 287.345 kb on + strandat 287.345 kb on + strandat 287.345 kb on + strandat 287.345 kb on + strandat 287.346 kb on - strandat 287.346 kb on - strandat 287.346 kb on - strandat 287.346 kb on - strandat 287.346 kb on - strandat 287.347 kb on + strandat 287.347 kb on + strandat 287.347 kb on + strandat 287.347 kb on + strandat 287.347 kb on + strandat 287.347 kb on + strandat 287.347 kb on + strandat 287.347 kb on + strandat 287.348 kb on - strandat 287.348 kb on - strandat 287.364 kb on - strand, within Ga0059261_0303at 287.522 kb on + strand, within Ga0059261_0303at 287.523 kb on - strand, within Ga0059261_0303at 287.600 kb on + strand, within Ga0059261_0303at 287.600 kb on + strand, within Ga0059261_0303at 287.600 kb on + strand, within Ga0059261_0303at 287.600 kb on + strand, within Ga0059261_0303at 287.601 kb on - strand, within Ga0059261_0303at 287.601 kb on - strand, within Ga0059261_0303at 287.601 kb on - strand, within Ga0059261_0303at 287.601 kb on - strand, within Ga0059261_0303at 287.840 kb on + strand, within Ga0059261_0303at 287.951 kb on + strand, within Ga0059261_0303at 287.951 kb on + strand, within Ga0059261_0303at 287.951 kb on + strand, within Ga0059261_0303at 287.951 kb on + strand, within Ga0059261_0303at 287.951 kb on + strand, within Ga0059261_0303at 287.951 kb on + strand, within Ga0059261_0303at 287.951 kb on + strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.993 kb on - strand, within Ga0059261_0303at 288.018 kb on - strand, within Ga0059261_0303at 288.062 kb on + strand, within Ga0059261_0303at 288.063 kb on - strand, within Ga0059261_0303at 288.063 kb on - strand, within Ga0059261_0303at 288.063 kb on - strand, within Ga0059261_0303at 288.063 kb on - strand, within Ga0059261_0303

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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285,753 + Ga0059261_0300 0.76 +0.7
285,753 + Ga0059261_0300 0.76 +0.3
285,753 + Ga0059261_0300 0.76 -0.4
285,754 - Ga0059261_0300 0.76 +0.1
285,754 - Ga0059261_0300 0.76 -0.3
285,967 + +3.2
286,138 + -0.3
286,138 + -0.6
286,138 + -0.2
286,139 - -0.8
286,139 - +0.2
286,139 - +0.2
286,148 + +0.3
286,148 + -0.5
286,149 - +0.6
286,149 - -0.6
286,152 + +0.0
286,152 + -0.3
286,153 - +0.0
286,153 - +0.1
286,153 - +0.4
286,153 - -0.7
286,153 - +0.1
286,163 + +0.0
286,191 + -0.5
286,258 + -0.2
286,324 + -0.4
286,389 + Ga0059261_0301 0.19 -0.0
286,390 - Ga0059261_0301 0.19 +0.1
286,431 - Ga0059261_0301 0.29 +0.2
286,599 + Ga0059261_0301 0.70 +0.2
286,599 + Ga0059261_0301 0.70 +0.3
286,599 + Ga0059261_0301 0.70 -0.2
286,600 - Ga0059261_0301 0.71 +0.3
286,602 - Ga0059261_0301 0.71 +0.4
286,602 - Ga0059261_0301 0.71 +0.0
286,602 - Ga0059261_0301 0.71 +0.9
286,611 + Ga0059261_0301 0.73 +0.1
286,611 + Ga0059261_0301 0.73 -0.2
286,611 + Ga0059261_0301 0.73 +1.2
286,612 - Ga0059261_0301 0.74 -0.0
286,612 - Ga0059261_0301 0.74 +0.3
286,612 - Ga0059261_0301 0.74 -0.8
286,612 - Ga0059261_0301 0.74 +0.2
286,612 - Ga0059261_0301 0.74 +0.0
286,721 + +0.2
286,722 - -0.5
286,722 - +0.3
286,722 - -0.3
286,870 + Ga0059261_0302 0.28 -0.3
286,870 + Ga0059261_0302 0.28 +0.1
286,871 - Ga0059261_0302 0.28 +0.6
286,871 - Ga0059261_0302 0.28 +2.1
287,023 + Ga0059261_0302 0.63 +0.4
287,038 + Ga0059261_0302 0.66 -0.2
287,038 + Ga0059261_0302 0.66 +1.1
287,039 - Ga0059261_0302 0.67 +0.5
287,053 + Ga0059261_0302 0.70 -0.2
287,053 + Ga0059261_0302 0.70 +0.4
287,053 + Ga0059261_0302 0.70 +0.1
287,053 + Ga0059261_0302 0.70 +0.5
287,053 + Ga0059261_0302 0.70 -0.1
287,053 + Ga0059261_0302 0.70 +0.4
287,053 + Ga0059261_0302 0.70 -0.1
287,053 + Ga0059261_0302 0.70 -0.3
287,053 + Ga0059261_0302 0.70 -0.0
287,054 - Ga0059261_0302 0.70 +0.4
287,054 - Ga0059261_0302 0.70 +0.4
287,054 - Ga0059261_0302 0.70 +0.3
287,054 - Ga0059261_0302 0.70 +1.7
287,054 - Ga0059261_0302 0.70 +0.2
287,054 - Ga0059261_0302 0.70 -0.1
287,054 - Ga0059261_0302 0.70 -0.1
287,078 + Ga0059261_0302 0.76 +0.4
287,078 + Ga0059261_0302 0.76 -0.6
287,079 - Ga0059261_0302 0.76 +1.2
287,182 + -0.8
287,182 + -0.0
287,183 - +0.7
287,183 - -0.3
287,183 - -0.1
287,205 + +0.2
287,205 + +0.7
287,205 + +0.0
287,206 - -0.4
287,219 + +0.3
287,219 + -0.2
287,219 + -0.5
287,257 + -0.0
287,257 + -0.4
287,257 + +0.6
287,257 + -0.1
287,258 - -0.5
287,273 - -0.6
287,345 + +0.2
287,345 + +1.2
287,345 + -0.2
287,345 + +0.1
287,345 + +0.6
287,345 + +0.1
287,345 + -0.3
287,346 - -0.4
287,346 - -0.2
287,346 - +0.8
287,346 - -0.1
287,346 - -0.0
287,347 + -0.3
287,347 + -0.2
287,347 + -0.3
287,347 + -0.4
287,347 + -0.0
287,347 + -0.2
287,347 + -0.9
287,347 + -0.4
287,348 - +1.1
287,348 - -0.2
287,364 - Ga0059261_0303 0.10 -0.2
287,522 + Ga0059261_0303 0.23 -0.1
287,523 - Ga0059261_0303 0.23 -0.2
287,600 + Ga0059261_0303 0.29 -0.6
287,600 + Ga0059261_0303 0.29 +0.3
287,600 + Ga0059261_0303 0.29 -0.3
287,600 + Ga0059261_0303 0.29 +0.9
287,601 - Ga0059261_0303 0.29 -1.3
287,601 - Ga0059261_0303 0.29 -0.1
287,601 - Ga0059261_0303 0.29 -0.9
287,601 - Ga0059261_0303 0.29 +0.3
287,840 + Ga0059261_0303 0.48 -0.2
287,951 + Ga0059261_0303 0.57 -0.7
287,951 + Ga0059261_0303 0.57 +0.6
287,951 + Ga0059261_0303 0.57 +0.2
287,951 + Ga0059261_0303 0.57 +0.9
287,951 + Ga0059261_0303 0.57 -0.6
287,951 + Ga0059261_0303 0.57 -0.2
287,951 + Ga0059261_0303 0.57 -0.8
287,952 - Ga0059261_0303 0.57 +0.5
287,952 - Ga0059261_0303 0.57 -1.1
287,952 - Ga0059261_0303 0.57 -0.9
287,952 - Ga0059261_0303 0.57 -0.3
287,952 - Ga0059261_0303 0.57 +0.3
287,952 - Ga0059261_0303 0.57 +0.4
287,952 - Ga0059261_0303 0.57 -0.5
287,952 - Ga0059261_0303 0.57 -0.4
287,952 - Ga0059261_0303 0.57 -0.3
287,952 - Ga0059261_0303 0.57 +0.1
287,952 - Ga0059261_0303 0.57 +0.6
287,952 - Ga0059261_0303 0.57 +0.6
287,952 - Ga0059261_0303 0.57 -0.5
287,952 - Ga0059261_0303 0.57 -1.1
287,953 + Ga0059261_0303 0.57 -1.0
287,953 + Ga0059261_0303 0.57 +0.1
287,953 + Ga0059261_0303 0.57 -0.3
287,953 + Ga0059261_0303 0.57 -0.6
287,953 + Ga0059261_0303 0.57 -1.0
287,953 + Ga0059261_0303 0.57 +0.5
287,953 + Ga0059261_0303 0.57 +0.1
287,953 + Ga0059261_0303 0.57 +0.2
287,953 + Ga0059261_0303 0.57 -0.7
287,953 + Ga0059261_0303 0.57 -0.4
287,953 + Ga0059261_0303 0.57 -0.6
287,953 + Ga0059261_0303 0.57 +0.3
287,953 + Ga0059261_0303 0.57 -0.5
287,953 + Ga0059261_0303 0.57 -0.4
287,953 + Ga0059261_0303 0.57 -0.4
287,953 + Ga0059261_0303 0.57 +0.4
287,953 + Ga0059261_0303 0.57 +0.1
287,954 - Ga0059261_0303 0.58 +0.2
287,954 - Ga0059261_0303 0.58 -0.5
287,954 - Ga0059261_0303 0.58 +0.4
287,954 - Ga0059261_0303 0.58 -0.1
287,954 - Ga0059261_0303 0.58 -0.8
287,954 - Ga0059261_0303 0.58 +0.0
287,954 - Ga0059261_0303 0.58 -0.5
287,954 - Ga0059261_0303 0.58 +0.2
287,954 - Ga0059261_0303 0.58 +0.4
287,954 - Ga0059261_0303 0.58 -0.6
287,954 - Ga0059261_0303 0.58 -0.2
287,954 - Ga0059261_0303 0.58 +0.4
287,954 - Ga0059261_0303 0.58 +0.7
287,954 - Ga0059261_0303 0.58 -0.5
287,954 - Ga0059261_0303 0.58 -1.2
287,993 - Ga0059261_0303 0.61 -1.3
288,018 - Ga0059261_0303 0.63 -0.1
288,062 + Ga0059261_0303 0.66 +1.0
288,063 - Ga0059261_0303 0.66 -0.6
288,063 - Ga0059261_0303 0.66 +0.3
288,063 - Ga0059261_0303 0.66 +1.2
288,063 - Ga0059261_0303 0.66 -0.3

Or see this region's nucleotide sequence