Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0284

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0282 and Ga0059261_0283 overlap by 1 nucleotidesGa0059261_0283 and Ga0059261_0284 are separated by 39 nucleotidesGa0059261_0284 and Ga0059261_0285 are separated by 50 nucleotides Ga0059261_0282: Ga0059261_0282 - ribosomal protein S12 methylthiotransferase RimO, at 267,425 to 268,753 _0282 Ga0059261_0283: Ga0059261_0283 - hypothetical protein, at 268,753 to 269,652 _0283 Ga0059261_0284: Ga0059261_0284 - Leucyl aminopeptidase, at 269,692 to 271,086 _0284 Ga0059261_0285: Ga0059261_0285 - Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase], at 271,137 to 272,795 _0285 Position (kb) 269 270 271 272Strain fitness (log2 ratio) -2 -1 0 1 2at 268.733 kb on + strandat 268.823 kb on + strandat 268.823 kb on + strandat 268.823 kb on + strandat 268.830 kb on + strandat 268.830 kb on + strandat 268.830 kb on + strandat 268.831 kb on - strandat 269.179 kb on + strand, within Ga0059261_0283at 269.180 kb on - strand, within Ga0059261_0283at 269.180 kb on - strand, within Ga0059261_0283at 269.180 kb on - strand, within Ga0059261_0283at 269.203 kb on + strand, within Ga0059261_0283at 269.203 kb on + strand, within Ga0059261_0283at 269.203 kb on + strand, within Ga0059261_0283at 269.204 kb on - strand, within Ga0059261_0283at 269.204 kb on - strand, within Ga0059261_0283at 269.204 kb on - strand, within Ga0059261_0283at 269.385 kb on + strand, within Ga0059261_0283at 269.386 kb on - strand, within Ga0059261_0283at 269.386 kb on - strand, within Ga0059261_0283at 269.386 kb on - strand, within Ga0059261_0283at 269.386 kb on - strand, within Ga0059261_0283at 269.395 kb on + strand, within Ga0059261_0283at 269.395 kb on + strand, within Ga0059261_0283at 269.395 kb on + strand, within Ga0059261_0283at 269.395 kb on + strand, within Ga0059261_0283at 269.395 kb on + strand, within Ga0059261_0283at 269.395 kb on + strand, within Ga0059261_0283at 269.395 kb on + strand, within Ga0059261_0283at 269.395 kb on + strand, within Ga0059261_0283at 269.396 kb on - strand, within Ga0059261_0283at 269.396 kb on - strand, within Ga0059261_0283at 269.396 kb on - strand, within Ga0059261_0283at 269.515 kb on + strand, within Ga0059261_0283at 269.515 kb on + strand, within Ga0059261_0283at 269.515 kb on + strand, within Ga0059261_0283at 269.515 kb on + strand, within Ga0059261_0283at 269.515 kb on + strand, within Ga0059261_0283at 269.515 kb on + strand, within Ga0059261_0283at 269.516 kb on - strand, within Ga0059261_0283at 269.516 kb on - strand, within Ga0059261_0283at 269.516 kb on - strand, within Ga0059261_0283at 269.516 kb on - strand, within Ga0059261_0283at 269.539 kb on + strand, within Ga0059261_0283at 269.539 kb on + strand, within Ga0059261_0283at 269.539 kb on + strand, within Ga0059261_0283at 269.539 kb on + strand, within Ga0059261_0283at 269.539 kb on + strand, within Ga0059261_0283at 269.539 kb on + strand, within Ga0059261_0283at 269.539 kb on + strand, within Ga0059261_0283at 269.539 kb on + strand, within Ga0059261_0283at 269.539 kb on + strand, within Ga0059261_0283at 269.540 kb on - strand, within Ga0059261_0283at 269.540 kb on - strand, within Ga0059261_0283at 269.540 kb on - strand, within Ga0059261_0283at 269.540 kb on - strand, within Ga0059261_0283at 269.540 kb on - strand, within Ga0059261_0283at 269.680 kb on + strandat 269.680 kb on + strandat 269.680 kb on + strandat 269.680 kb on + strandat 269.680 kb on + strandat 269.681 kb on - strandat 269.681 kb on - strandat 269.681 kb on - strandat 269.681 kb on - strandat 269.681 kb on - strandat 269.681 kb on - strandat 269.681 kb on - strandat 269.681 kb on - strandat 269.900 kb on + strand, within Ga0059261_0284at 269.900 kb on + strand, within Ga0059261_0284at 269.901 kb on - strand, within Ga0059261_0284at 269.901 kb on - strand, within Ga0059261_0284at 269.901 kb on - strand, within Ga0059261_0284at 269.968 kb on + strand, within Ga0059261_0284at 269.968 kb on + strand, within Ga0059261_0284at 269.969 kb on - strand, within Ga0059261_0284at 269.969 kb on - strand, within Ga0059261_0284at 270.025 kb on + strand, within Ga0059261_0284at 270.025 kb on + strand, within Ga0059261_0284at 270.026 kb on - strand, within Ga0059261_0284at 270.222 kb on + strand, within Ga0059261_0284at 270.222 kb on + strand, within Ga0059261_0284at 270.223 kb on - strand, within Ga0059261_0284at 270.223 kb on - strand, within Ga0059261_0284at 270.269 kb on - strand, within Ga0059261_0284at 270.447 kb on + strand, within Ga0059261_0284at 270.447 kb on + strand, within Ga0059261_0284at 270.448 kb on - strand, within Ga0059261_0284at 270.525 kb on + strand, within Ga0059261_0284at 270.526 kb on - strand, within Ga0059261_0284at 270.526 kb on - strand, within Ga0059261_0284at 270.526 kb on - strand, within Ga0059261_0284at 270.762 kb on + strand, within Ga0059261_0284at 270.763 kb on - strand, within Ga0059261_0284at 271.070 kb on - strandat 271.152 kb on - strandat 271.202 kb on + strandat 271.203 kb on - strandat 271.268 kb on - strandat 271.560 kb on + strand, within Ga0059261_0285at 271.560 kb on + strand, within Ga0059261_0285at 271.560 kb on + strand, within Ga0059261_0285at 271.560 kb on + strand, within Ga0059261_0285at 271.561 kb on - strand, within Ga0059261_0285at 271.561 kb on - strand, within Ga0059261_0285at 271.561 kb on - strandat 271.561 kb on - strand, within Ga0059261_0285at 271.561 kb on - strand, within Ga0059261_0285at 271.681 kb on - strand, within Ga0059261_0285at 271.998 kb on + strandat 271.999 kb on - strand, within Ga0059261_0285at 271.999 kb on - strand, within Ga0059261_0285at 272.076 kb on + strand, within Ga0059261_0285at 272.076 kb on + strand, within Ga0059261_0285at 272.076 kb on + strand, within Ga0059261_0285at 272.076 kb on + strand, within Ga0059261_0285at 272.076 kb on + strand, within Ga0059261_0285at 272.077 kb on - strand, within Ga0059261_0285at 272.077 kb on - strand, within Ga0059261_0285at 272.077 kb on - strand, within Ga0059261_0285at 272.077 kb on - strand, within Ga0059261_0285at 272.077 kb on - strand, within Ga0059261_0285at 272.077 kb on - strand, within Ga0059261_0285at 272.077 kb on - strand, within Ga0059261_0285at 272.077 kb on - strand, within Ga0059261_0285

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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268,733 + -0.1
268,823 + -0.4
268,823 + +0.1
268,823 + -0.4
268,830 + +0.5
268,830 + -0.0
268,830 + -0.4
268,831 - -1.4
269,179 + Ga0059261_0283 0.47 +0.2
269,180 - Ga0059261_0283 0.47 -0.3
269,180 - Ga0059261_0283 0.47 +0.6
269,180 - Ga0059261_0283 0.47 +0.6
269,203 + Ga0059261_0283 0.50 -0.1
269,203 + Ga0059261_0283 0.50 -0.2
269,203 + Ga0059261_0283 0.50 +1.1
269,204 - Ga0059261_0283 0.50 -0.5
269,204 - Ga0059261_0283 0.50 -0.2
269,204 - Ga0059261_0283 0.50 +0.2
269,385 + Ga0059261_0283 0.70 -2.4
269,386 - Ga0059261_0283 0.70 +0.1
269,386 - Ga0059261_0283 0.70 +0.0
269,386 - Ga0059261_0283 0.70 -0.9
269,386 - Ga0059261_0283 0.70 +0.0
269,395 + Ga0059261_0283 0.71 +0.1
269,395 + Ga0059261_0283 0.71 +0.1
269,395 + Ga0059261_0283 0.71 -0.3
269,395 + Ga0059261_0283 0.71 +0.1
269,395 + Ga0059261_0283 0.71 -0.4
269,395 + Ga0059261_0283 0.71 +0.2
269,395 + Ga0059261_0283 0.71 -0.7
269,395 + Ga0059261_0283 0.71 +0.6
269,396 - Ga0059261_0283 0.71 +0.4
269,396 - Ga0059261_0283 0.71 -0.1
269,396 - Ga0059261_0283 0.71 -0.5
269,515 + Ga0059261_0283 0.85 +2.4
269,515 + Ga0059261_0283 0.85 +0.5
269,515 + Ga0059261_0283 0.85 -0.1
269,515 + Ga0059261_0283 0.85 -0.0
269,515 + Ga0059261_0283 0.85 -0.4
269,515 + Ga0059261_0283 0.85 -0.3
269,516 - Ga0059261_0283 0.85 +0.6
269,516 - Ga0059261_0283 0.85 -0.4
269,516 - Ga0059261_0283 0.85 -0.5
269,516 - Ga0059261_0283 0.85 -0.1
269,539 + Ga0059261_0283 0.87 -0.3
269,539 + Ga0059261_0283 0.87 -0.6
269,539 + Ga0059261_0283 0.87 +0.2
269,539 + Ga0059261_0283 0.87 +0.7
269,539 + Ga0059261_0283 0.87 +0.4
269,539 + Ga0059261_0283 0.87 +0.4
269,539 + Ga0059261_0283 0.87 +0.2
269,539 + Ga0059261_0283 0.87 +1.6
269,539 + Ga0059261_0283 0.87 +0.1
269,540 - Ga0059261_0283 0.87 +0.1
269,540 - Ga0059261_0283 0.87 -0.0
269,540 - Ga0059261_0283 0.87 +0.1
269,540 - Ga0059261_0283 0.87 +0.4
269,540 - Ga0059261_0283 0.87 +0.7
269,680 + +0.4
269,680 + -0.7
269,680 + -0.1
269,680 + +0.3
269,680 + +0.3
269,681 - -0.6
269,681 - +0.4
269,681 - +0.5
269,681 - +0.9
269,681 - +0.4
269,681 - +0.8
269,681 - +0.2
269,681 - -0.7
269,900 + Ga0059261_0284 0.15 -0.6
269,900 + Ga0059261_0284 0.15 +0.1
269,901 - Ga0059261_0284 0.15 +1.6
269,901 - Ga0059261_0284 0.15 -1.4
269,901 - Ga0059261_0284 0.15 +0.9
269,968 + Ga0059261_0284 0.20 +0.7
269,968 + Ga0059261_0284 0.20 -0.5
269,969 - Ga0059261_0284 0.20 +0.0
269,969 - Ga0059261_0284 0.20 +1.1
270,025 + Ga0059261_0284 0.24 +0.1
270,025 + Ga0059261_0284 0.24 +0.1
270,026 - Ga0059261_0284 0.24 +0.2
270,222 + Ga0059261_0284 0.38 +1.3
270,222 + Ga0059261_0284 0.38 +0.8
270,223 - Ga0059261_0284 0.38 -0.2
270,223 - Ga0059261_0284 0.38 +0.8
270,269 - Ga0059261_0284 0.41 -0.3
270,447 + Ga0059261_0284 0.54 +0.5
270,447 + Ga0059261_0284 0.54 +0.6
270,448 - Ga0059261_0284 0.54 +1.0
270,525 + Ga0059261_0284 0.60 +0.5
270,526 - Ga0059261_0284 0.60 -0.7
270,526 - Ga0059261_0284 0.60 +0.2
270,526 - Ga0059261_0284 0.60 -0.1
270,762 + Ga0059261_0284 0.77 +0.2
270,763 - Ga0059261_0284 0.77 +0.6
271,070 - +0.6
271,152 - +0.2
271,202 + +1.1
271,203 - +0.1
271,268 - -0.4
271,560 + Ga0059261_0285 0.25 +0.6
271,560 + Ga0059261_0285 0.25 +0.7
271,560 + Ga0059261_0285 0.25 -1.0
271,560 + Ga0059261_0285 0.25 +0.5
271,561 - Ga0059261_0285 0.26 -2.1
271,561 - Ga0059261_0285 0.26 -2.4
271,561 - +0.5
271,561 - Ga0059261_0285 0.26 +0.9
271,561 - Ga0059261_0285 0.26 +0.8
271,681 - Ga0059261_0285 0.33 +0.4
271,998 + -0.1
271,999 - Ga0059261_0285 0.52 -0.2
271,999 - Ga0059261_0285 0.52 +0.6
272,076 + Ga0059261_0285 0.57 +0.3
272,076 + Ga0059261_0285 0.57 -0.2
272,076 + Ga0059261_0285 0.57 +0.8
272,076 + Ga0059261_0285 0.57 +0.2
272,076 + Ga0059261_0285 0.57 +0.1
272,077 - Ga0059261_0285 0.57 +0.3
272,077 - Ga0059261_0285 0.57 -0.5
272,077 - Ga0059261_0285 0.57 +0.1
272,077 - Ga0059261_0285 0.57 +0.7
272,077 - Ga0059261_0285 0.57 -0.3
272,077 - Ga0059261_0285 0.57 +1.3
272,077 - Ga0059261_0285 0.57 +0.5
272,077 - Ga0059261_0285 0.57 +0.7

Or see this region's nucleotide sequence