Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0038

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0037 and Ga0059261_0038 are separated by 87 nucleotidesGa0059261_0038 and Ga0059261_0039 are separated by 180 nucleotides Ga0059261_0037: Ga0059261_0037 - hypothetical protein, at 32,101 to 33,363 _0037 Ga0059261_0038: Ga0059261_0038 - Transcriptional regulators, at 33,451 to 33,915 _0038 Ga0059261_0039: Ga0059261_0039 - His Kinase A (phospho-acceptor) domain, at 34,096 to 35,907 _0039 Position (kb) 33 34Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 32.521 kb on + strand, within Ga0059261_0037at 32.522 kb on - strand, within Ga0059261_0037at 32.526 kb on + strand, within Ga0059261_0037at 32.527 kb on - strand, within Ga0059261_0037at 32.527 kb on - strand, within Ga0059261_0037at 32.548 kb on + strand, within Ga0059261_0037at 32.548 kb on + strand, within Ga0059261_0037at 32.548 kb on + strand, within Ga0059261_0037at 32.548 kb on + strand, within Ga0059261_0037at 32.548 kb on + strand, within Ga0059261_0037at 32.549 kb on - strand, within Ga0059261_0037at 32.549 kb on - strand, within Ga0059261_0037at 32.549 kb on - strand, within Ga0059261_0037at 32.549 kb on - strand, within Ga0059261_0037at 32.549 kb on - strand, within Ga0059261_0037at 32.690 kb on - strand, within Ga0059261_0037at 32.690 kb on - strand, within Ga0059261_0037at 32.713 kb on + strand, within Ga0059261_0037at 32.713 kb on + strand, within Ga0059261_0037at 32.713 kb on + strand, within Ga0059261_0037at 32.713 kb on + strand, within Ga0059261_0037at 32.713 kb on + strand, within Ga0059261_0037at 32.714 kb on - strand, within Ga0059261_0037at 32.714 kb on - strand, within Ga0059261_0037at 32.714 kb on - strand, within Ga0059261_0037at 32.771 kb on - strand, within Ga0059261_0037at 32.809 kb on + strand, within Ga0059261_0037at 32.810 kb on - strand, within Ga0059261_0037at 32.810 kb on - strand, within Ga0059261_0037at 32.810 kb on - strand, within Ga0059261_0037at 32.914 kb on + strand, within Ga0059261_0037at 32.923 kb on + strand, within Ga0059261_0037at 32.923 kb on + strand, within Ga0059261_0037at 32.923 kb on + strand, within Ga0059261_0037at 32.924 kb on - strand, within Ga0059261_0037at 32.924 kb on - strand, within Ga0059261_0037at 32.924 kb on - strand, within Ga0059261_0037at 32.924 kb on - strand, within Ga0059261_0037at 32.924 kb on - strand, within Ga0059261_0037at 33.034 kb on + strand, within Ga0059261_0037at 33.034 kb on + strand, within Ga0059261_0037at 33.034 kb on + strand, within Ga0059261_0037at 33.034 kb on + strand, within Ga0059261_0037at 33.034 kb on + strand, within Ga0059261_0037at 33.034 kb on + strand, within Ga0059261_0037at 33.035 kb on - strand, within Ga0059261_0037at 33.035 kb on - strand, within Ga0059261_0037at 33.035 kb on - strand, within Ga0059261_0037at 33.035 kb on - strand, within Ga0059261_0037at 33.143 kb on - strand, within Ga0059261_0037at 33.160 kb on + strand, within Ga0059261_0037at 33.161 kb on - strand, within Ga0059261_0037at 33.161 kb on - strand, within Ga0059261_0037at 33.624 kb on - strand, within Ga0059261_0038at 33.624 kb on - strand, within Ga0059261_0038at 33.726 kb on + strand, within Ga0059261_0038at 33.726 kb on + strand, within Ga0059261_0038at 33.727 kb on - strand, within Ga0059261_0038at 33.727 kb on - strand, within Ga0059261_0038at 33.727 kb on - strand, within Ga0059261_0038at 33.727 kb on - strand, within Ga0059261_0038at 33.727 kb on - strand, within Ga0059261_0038at 33.727 kb on - strand, within Ga0059261_0038at 33.728 kb on + strand, within Ga0059261_0038at 33.762 kb on - strand, within Ga0059261_0038at 33.968 kb on + strandat 33.969 kb on - strandat 33.969 kb on - strandat 34.275 kb on + strandat 34.414 kb on + strand, within Ga0059261_0039at 34.414 kb on + strand, within Ga0059261_0039at 34.414 kb on + strand, within Ga0059261_0039at 34.414 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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32,521 + Ga0059261_0037 0.33 -1.7
32,522 - Ga0059261_0037 0.33 -1.5
32,526 + Ga0059261_0037 0.34 -0.1
32,527 - Ga0059261_0037 0.34 -2.1
32,527 - Ga0059261_0037 0.34 -1.1
32,548 + Ga0059261_0037 0.35 -1.2
32,548 + Ga0059261_0037 0.35 -3.1
32,548 + Ga0059261_0037 0.35 -1.5
32,548 + Ga0059261_0037 0.35 -1.5
32,548 + Ga0059261_0037 0.35 -2.0
32,549 - Ga0059261_0037 0.35 -1.4
32,549 - Ga0059261_0037 0.35 -2.4
32,549 - Ga0059261_0037 0.35 -2.2
32,549 - Ga0059261_0037 0.35 -1.0
32,549 - Ga0059261_0037 0.35 -0.5
32,690 - Ga0059261_0037 0.47 -0.6
32,690 - Ga0059261_0037 0.47 -1.3
32,713 + Ga0059261_0037 0.48 -1.6
32,713 + Ga0059261_0037 0.48 -2.0
32,713 + Ga0059261_0037 0.48 -1.9
32,713 + Ga0059261_0037 0.48 -0.4
32,713 + Ga0059261_0037 0.48 -1.0
32,714 - Ga0059261_0037 0.49 -0.3
32,714 - Ga0059261_0037 0.49 -3.1
32,714 - Ga0059261_0037 0.49 -1.7
32,771 - Ga0059261_0037 0.53 -0.2
32,809 + Ga0059261_0037 0.56 -1.3
32,810 - Ga0059261_0037 0.56 -1.3
32,810 - Ga0059261_0037 0.56 -1.5
32,810 - Ga0059261_0037 0.56 -2.7
32,914 + Ga0059261_0037 0.64 -0.9
32,923 + Ga0059261_0037 0.65 -0.3
32,923 + Ga0059261_0037 0.65 -0.8
32,923 + Ga0059261_0037 0.65 -1.4
32,924 - Ga0059261_0037 0.65 -1.9
32,924 - Ga0059261_0037 0.65 -1.3
32,924 - Ga0059261_0037 0.65 -1.6
32,924 - Ga0059261_0037 0.65 -2.0
32,924 - Ga0059261_0037 0.65 -1.4
33,034 + Ga0059261_0037 0.74 -3.5
33,034 + Ga0059261_0037 0.74 -1.3
33,034 + Ga0059261_0037 0.74 -0.8
33,034 + Ga0059261_0037 0.74 -2.4
33,034 + Ga0059261_0037 0.74 -1.6
33,034 + Ga0059261_0037 0.74 -1.9
33,035 - Ga0059261_0037 0.74 -0.8
33,035 - Ga0059261_0037 0.74 -1.7
33,035 - Ga0059261_0037 0.74 -1.0
33,035 - Ga0059261_0037 0.74 -0.7
33,143 - Ga0059261_0037 0.83 +1.3
33,160 + Ga0059261_0037 0.84 -0.1
33,161 - Ga0059261_0037 0.84 -1.2
33,161 - Ga0059261_0037 0.84 -1.9
33,624 - Ga0059261_0038 0.37 +2.1
33,624 - Ga0059261_0038 0.37 +2.8
33,726 + Ga0059261_0038 0.59 +2.2
33,726 + Ga0059261_0038 0.59 +2.8
33,727 - Ga0059261_0038 0.59 +2.5
33,727 - Ga0059261_0038 0.59 +2.5
33,727 - Ga0059261_0038 0.59 +1.7
33,727 - Ga0059261_0038 0.59 +1.8
33,727 - Ga0059261_0038 0.59 +2.3
33,727 - Ga0059261_0038 0.59 +3.0
33,728 + Ga0059261_0038 0.60 +2.8
33,762 - Ga0059261_0038 0.67 +2.2
33,968 + +1.1
33,969 - -0.1
33,969 - -0.6
34,275 + +0.1
34,414 + Ga0059261_0039 0.18 +0.1
34,414 + Ga0059261_0039 0.18 -0.3
34,414 + Ga0059261_0039 0.18 -0.2
34,414 + -0.1

Or see this region's nucleotide sequence