Experiment: PYE with Nickel (II) chloride 0.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02588 and CCNA_02589 are separated by 159 nucleotides CCNA_02589 and CCNA_02590 are separated by 13 nucleotides CCNA_02590 and CCNA_02591 are separated by 49 nucleotides
CCNA_02588: CCNA_02588 - aminopeptidase, at 2,738,277 to 2,739,206
_02588
CCNA_02589: CCNA_02589 - BolA-related transcriptional regulator, at 2,739,366 to 2,739,602
_02589
CCNA_02590: CCNA_02590 - aldo-keto reductase family protein, at 2,739,616 to 2,740,506
_02590
CCNA_02591: CCNA_02591 - glutaredoxin, at 2,740,556 to 2,740,897
_02591
Position (kb)
2739
2740 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2738.370 kb on - strand, within CCNA_02588 at 2738.388 kb on + strand, within CCNA_02588 at 2738.403 kb on + strand, within CCNA_02588 at 2738.411 kb on - strand, within CCNA_02588 at 2738.418 kb on + strand, within CCNA_02588 at 2738.421 kb on - strand, within CCNA_02588 at 2738.421 kb on - strand, within CCNA_02588 at 2738.493 kb on + strand, within CCNA_02588 at 2738.493 kb on + strand, within CCNA_02588 at 2738.493 kb on - strand, within CCNA_02588 at 2738.509 kb on + strand, within CCNA_02588 at 2738.665 kb on - strand, within CCNA_02588 at 2738.723 kb on + strand, within CCNA_02588 at 2738.728 kb on + strand, within CCNA_02588 at 2738.729 kb on - strand, within CCNA_02588 at 2738.736 kb on - strand, within CCNA_02588 at 2738.747 kb on + strand, within CCNA_02588 at 2738.763 kb on - strand, within CCNA_02588 at 2738.824 kb on - strand, within CCNA_02588 at 2738.840 kb on - strand, within CCNA_02588 at 2738.840 kb on - strand, within CCNA_02588 at 2738.840 kb on - strand, within CCNA_02588 at 2738.892 kb on - strand, within CCNA_02588 at 2738.892 kb on - strand, within CCNA_02588 at 2738.892 kb on - strand, within CCNA_02588 at 2738.913 kb on + strand, within CCNA_02588 at 2738.916 kb on - strand, within CCNA_02588 at 2738.975 kb on - strand, within CCNA_02588 at 2738.986 kb on - strand, within CCNA_02588 at 2739.144 kb on - strand at 2739.149 kb on - strand at 2739.209 kb on + strand at 2739.219 kb on + strand at 2739.283 kb on + strand at 2739.291 kb on - strand at 2739.361 kb on + strand at 2739.374 kb on + strand at 2739.385 kb on + strand at 2739.494 kb on - strand, within CCNA_02589 at 2739.496 kb on - strand, within CCNA_02589 at 2739.529 kb on + strand, within CCNA_02589 at 2739.537 kb on - strand, within CCNA_02589 at 2739.605 kb on - strand at 2739.606 kb on + strand at 2739.667 kb on - strand at 2739.678 kb on + strand at 2739.683 kb on - strand at 2739.713 kb on + strand, within CCNA_02590 at 2739.713 kb on + strand, within CCNA_02590 at 2739.715 kb on + strand, within CCNA_02590 at 2739.721 kb on - strand, within CCNA_02590 at 2739.721 kb on - strand, within CCNA_02590 at 2739.738 kb on - strand, within CCNA_02590 at 2739.788 kb on - strand, within CCNA_02590 at 2739.793 kb on + strand, within CCNA_02590 at 2739.793 kb on + strand, within CCNA_02590 at 2739.799 kb on + strand, within CCNA_02590 at 2739.886 kb on + strand, within CCNA_02590 at 2739.895 kb on - strand, within CCNA_02590 at 2739.910 kb on + strand, within CCNA_02590 at 2739.926 kb on + strand, within CCNA_02590 at 2739.926 kb on + strand, within CCNA_02590 at 2739.934 kb on - strand, within CCNA_02590 at 2739.934 kb on - strand, within CCNA_02590 at 2739.934 kb on - strand, within CCNA_02590 at 2739.969 kb on + strand, within CCNA_02590 at 2739.969 kb on + strand, within CCNA_02590 at 2739.977 kb on - strand, within CCNA_02590 at 2739.984 kb on - strand, within CCNA_02590 at 2740.000 kb on - strand, within CCNA_02590 at 2740.011 kb on - strand, within CCNA_02590 at 2740.063 kb on + strand, within CCNA_02590 at 2740.093 kb on - strand, within CCNA_02590 at 2740.144 kb on - strand, within CCNA_02590 at 2740.232 kb on - strand, within CCNA_02590 at 2740.263 kb on + strand, within CCNA_02590 at 2740.268 kb on - strand, within CCNA_02590 at 2740.333 kb on - strand, within CCNA_02590 at 2740.336 kb on + strand, within CCNA_02590 at 2740.349 kb on - strand, within CCNA_02590 at 2740.375 kb on + strand, within CCNA_02590 at 2740.392 kb on + strand, within CCNA_02590 at 2740.418 kb on + strand at 2740.421 kb on - strand at 2740.428 kb on + strand at 2740.479 kb on - strand at 2740.479 kb on - strand at 2740.500 kb on + strand at 2740.508 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Nickel (II) chloride 0.15 mM remove 2,738,370 - CCNA_02588 0.10 -0.6 2,738,388 + CCNA_02588 0.12 +0.5 2,738,403 + CCNA_02588 0.14 -1.4 2,738,411 - CCNA_02588 0.14 +0.1 2,738,418 + CCNA_02588 0.15 +0.1 2,738,421 - CCNA_02588 0.15 +0.2 2,738,421 - CCNA_02588 0.15 -0.1 2,738,493 + CCNA_02588 0.23 +0.6 2,738,493 + CCNA_02588 0.23 -2.4 2,738,493 - CCNA_02588 0.23 -0.9 2,738,509 + CCNA_02588 0.25 +2.1 2,738,665 - CCNA_02588 0.42 -0.1 2,738,723 + CCNA_02588 0.48 +0.5 2,738,728 + CCNA_02588 0.48 -1.8 2,738,729 - CCNA_02588 0.49 +0.3 2,738,736 - CCNA_02588 0.49 -0.5 2,738,747 + CCNA_02588 0.51 -1.0 2,738,763 - CCNA_02588 0.52 +0.2 2,738,824 - CCNA_02588 0.59 +0.5 2,738,840 - CCNA_02588 0.61 +0.0 2,738,840 - CCNA_02588 0.61 +0.3 2,738,840 - CCNA_02588 0.61 +0.9 2,738,892 - CCNA_02588 0.66 +0.8 2,738,892 - CCNA_02588 0.66 -0.3 2,738,892 - CCNA_02588 0.66 -3.1 2,738,913 + CCNA_02588 0.68 +0.6 2,738,916 - CCNA_02588 0.69 -1.2 2,738,975 - CCNA_02588 0.75 -1.4 2,738,986 - CCNA_02588 0.76 -0.3 2,739,144 - +0.4 2,739,149 - -0.0 2,739,209 + -0.7 2,739,219 + -0.5 2,739,283 + +0.2 2,739,291 - +0.0 2,739,361 + +0.0 2,739,374 + +0.0 2,739,385 + +0.6 2,739,494 - CCNA_02589 0.54 -0.5 2,739,496 - CCNA_02589 0.55 -2.9 2,739,529 + CCNA_02589 0.69 -0.8 2,739,537 - CCNA_02589 0.72 -1.8 2,739,605 - +0.1 2,739,606 + -0.2 2,739,667 - -2.0 2,739,678 + +0.5 2,739,683 - -2.4 2,739,713 + CCNA_02590 0.11 -0.6 2,739,713 + CCNA_02590 0.11 +0.8 2,739,715 + CCNA_02590 0.11 -0.5 2,739,721 - CCNA_02590 0.12 +0.2 2,739,721 - CCNA_02590 0.12 +0.5 2,739,738 - CCNA_02590 0.14 -1.5 2,739,788 - CCNA_02590 0.19 -1.2 2,739,793 + CCNA_02590 0.20 +0.2 2,739,793 + CCNA_02590 0.20 +0.3 2,739,799 + CCNA_02590 0.21 -0.1 2,739,886 + CCNA_02590 0.30 -0.4 2,739,895 - CCNA_02590 0.31 -0.5 2,739,910 + CCNA_02590 0.33 -0.4 2,739,926 + CCNA_02590 0.35 -0.6 2,739,926 + CCNA_02590 0.35 +0.6 2,739,934 - CCNA_02590 0.36 -1.5 2,739,934 - CCNA_02590 0.36 -0.6 2,739,934 - CCNA_02590 0.36 +0.5 2,739,969 + CCNA_02590 0.40 +0.4 2,739,969 + CCNA_02590 0.40 -0.2 2,739,977 - CCNA_02590 0.41 -0.0 2,739,984 - CCNA_02590 0.41 -1.6 2,740,000 - CCNA_02590 0.43 -0.4 2,740,011 - CCNA_02590 0.44 +2.2 2,740,063 + CCNA_02590 0.50 +0.6 2,740,093 - CCNA_02590 0.54 -0.3 2,740,144 - CCNA_02590 0.59 +0.4 2,740,232 - CCNA_02590 0.69 -2.8 2,740,263 + CCNA_02590 0.73 -0.3 2,740,268 - CCNA_02590 0.73 -0.3 2,740,333 - CCNA_02590 0.80 +0.1 2,740,336 + CCNA_02590 0.81 +0.4 2,740,349 - CCNA_02590 0.82 -1.4 2,740,375 + CCNA_02590 0.85 +0.4 2,740,392 + CCNA_02590 0.87 -0.3 2,740,418 + -0.6 2,740,421 - -2.0 2,740,428 + -0.3 2,740,479 - -0.1 2,740,479 - +1.3 2,740,500 + +0.2 2,740,508 - +0.5
Or see this region's nucleotide sequence