Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_931

Experiment: sodium fluoride 35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_930 and Ac3H11_931 are separated by 321 nucleotidesAc3H11_931 and Ac3H11_932 are separated by 133 nucleotides Ac3H11_930 - hypothetical protein, at 44,593 to 45,345 _930 Ac3H11_931 - Phytoene synthase (EC 2.5.1.32), at 45,667 to 46,611 _931 Ac3H11_932 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 46,745 to 47,980 _932 Position (kb) 45 46 47Strain fitness (log2 ratio) -2 -1 0 1 2at 44.675 kb on + strand, within Ac3H11_930at 44.675 kb on + strand, within Ac3H11_930at 44.675 kb on + strand, within Ac3H11_930at 44.675 kb on + strand, within Ac3H11_930at 44.675 kb on + strand, within Ac3H11_930at 44.675 kb on + strand, within Ac3H11_930at 44.675 kb on + strand, within Ac3H11_930at 44.675 kb on + strand, within Ac3H11_930at 44.676 kb on - strand, within Ac3H11_930at 44.676 kb on - strand, within Ac3H11_930at 44.676 kb on - strand, within Ac3H11_930at 44.676 kb on - strand, within Ac3H11_930at 44.774 kb on + strand, within Ac3H11_930at 44.774 kb on + strand, within Ac3H11_930at 44.774 kb on + strand, within Ac3H11_930at 44.775 kb on - strand, within Ac3H11_930at 44.775 kb on - strand, within Ac3H11_930at 44.977 kb on + strand, within Ac3H11_930at 45.071 kb on + strand, within Ac3H11_930at 45.071 kb on + strand, within Ac3H11_930at 45.132 kb on - strand, within Ac3H11_930at 45.373 kb on + strandat 45.374 kb on - strandat 45.421 kb on + strandat 45.421 kb on + strandat 45.422 kb on - strandat 45.457 kb on + strandat 45.458 kb on - strandat 45.458 kb on - strandat 45.467 kb on + strandat 45.489 kb on - strandat 45.668 kb on + strandat 45.668 kb on + strandat 45.668 kb on + strandat 45.668 kb on + strandat 45.669 kb on - strandat 45.669 kb on - strandat 45.669 kb on - strandat 45.669 kb on - strandat 45.669 kb on - strandat 46.674 kb on + strandat 46.976 kb on + strand, within Ac3H11_932at 47.111 kb on + strand, within Ac3H11_932at 47.111 kb on + strand, within Ac3H11_932at 47.111 kb on + strand, within Ac3H11_932at 47.111 kb on + strand, within Ac3H11_932at 47.112 kb on - strand, within Ac3H11_932at 47.112 kb on - strand, within Ac3H11_932at 47.327 kb on + strand, within Ac3H11_932at 47.327 kb on + strand, within Ac3H11_932at 47.328 kb on - strand, within Ac3H11_932at 47.328 kb on - strand, within Ac3H11_932at 47.328 kb on - strand, within Ac3H11_932at 47.328 kb on - strand, within Ac3H11_932

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 35 mM
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44,675 + Ac3H11_930 0.11 +0.8
44,675 + Ac3H11_930 0.11 +0.4
44,675 + Ac3H11_930 0.11 -2.4
44,675 + Ac3H11_930 0.11 -0.4
44,675 + Ac3H11_930 0.11 -0.1
44,675 + Ac3H11_930 0.11 -2.3
44,675 + Ac3H11_930 0.11 +0.2
44,675 + Ac3H11_930 0.11 +0.7
44,676 - Ac3H11_930 0.11 -0.1
44,676 - Ac3H11_930 0.11 -0.5
44,676 - Ac3H11_930 0.11 +0.3
44,676 - Ac3H11_930 0.11 +0.5
44,774 + Ac3H11_930 0.24 -0.0
44,774 + Ac3H11_930 0.24 -0.7
44,774 + Ac3H11_930 0.24 -0.1
44,775 - Ac3H11_930 0.24 -0.2
44,775 - Ac3H11_930 0.24 +0.2
44,977 + Ac3H11_930 0.51 -0.9
45,071 + Ac3H11_930 0.63 -0.5
45,071 + Ac3H11_930 0.63 -1.0
45,132 - Ac3H11_930 0.72 +0.8
45,373 + +0.2
45,374 - -0.7
45,421 + +0.3
45,421 + -0.2
45,422 - +0.5
45,457 + -0.3
45,458 - +0.8
45,458 - +0.5
45,467 + -0.0
45,489 - -0.4
45,668 + -0.4
45,668 + +0.1
45,668 + -0.1
45,668 + -0.6
45,669 - +0.1
45,669 - -0.1
45,669 - -0.1
45,669 - +0.4
45,669 - -0.6
46,674 + -0.5
46,976 + Ac3H11_932 0.19 -0.5
47,111 + Ac3H11_932 0.30 +2.3
47,111 + Ac3H11_932 0.30 -0.8
47,111 + Ac3H11_932 0.30 -0.7
47,111 + Ac3H11_932 0.30 -0.3
47,112 - Ac3H11_932 0.30 -0.9
47,112 - Ac3H11_932 0.30 +0.3
47,327 + Ac3H11_932 0.47 +0.7
47,327 + Ac3H11_932 0.47 +0.3
47,328 - Ac3H11_932 0.47 -0.3
47,328 - Ac3H11_932 0.47 -0.3
47,328 - Ac3H11_932 0.47 -0.7
47,328 - Ac3H11_932 0.47 -0.1

Or see this region's nucleotide sequence