Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_827

Experiment: sodium fluoride 35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_826 and Ac3H11_827 are separated by 138 nucleotidesAc3H11_827 and Ac3H11_828 are separated by 90 nucleotides Ac3H11_826 - FIG00932717: hypothetical protein, at 109,041 to 110,387 _826 Ac3H11_827 - Magnesium and cobalt efflux protein CorC, at 110,526 to 111,851 _827 Ac3H11_828 - hypothetical protein, at 111,942 to 113,129 _828 Position (kb) 110 111 112Strain fitness (log2 ratio) -2 -1 0 1 2at 110.162 kb on - strand, within Ac3H11_826at 110.199 kb on + strand, within Ac3H11_826at 110.199 kb on + strand, within Ac3H11_826at 110.199 kb on + strand, within Ac3H11_826at 110.199 kb on + strand, within Ac3H11_826at 110.199 kb on + strand, within Ac3H11_826at 110.199 kb on + strand, within Ac3H11_826at 110.199 kb on + strand, within Ac3H11_826at 110.199 kb on + strand, within Ac3H11_826at 110.199 kb on + strand, within Ac3H11_826at 110.200 kb on - strand, within Ac3H11_826at 110.200 kb on - strand, within Ac3H11_826at 110.200 kb on - strand, within Ac3H11_826at 110.200 kb on - strand, within Ac3H11_826at 110.334 kb on + strandat 110.334 kb on + strandat 110.334 kb on + strandat 110.334 kb on + strandat 110.334 kb on + strandat 110.335 kb on - strandat 110.335 kb on - strandat 110.335 kb on - strandat 110.340 kb on + strandat 110.340 kb on + strandat 110.340 kb on + strandat 110.340 kb on + strandat 110.341 kb on - strandat 110.397 kb on + strandat 110.397 kb on + strandat 110.398 kb on - strandat 110.398 kb on - strandat 110.408 kb on + strandat 110.408 kb on + strandat 110.408 kb on + strandat 110.408 kb on + strandat 110.409 kb on - strandat 110.409 kb on - strandat 110.909 kb on - strand, within Ac3H11_827at 110.992 kb on + strand, within Ac3H11_827at 110.992 kb on + strand, within Ac3H11_827at 110.992 kb on + strand, within Ac3H11_827at 110.992 kb on + strand, within Ac3H11_827at 110.992 kb on + strand, within Ac3H11_827at 110.992 kb on + strand, within Ac3H11_827at 110.992 kb on + strand, within Ac3H11_827at 110.992 kb on + strand, within Ac3H11_827at 110.993 kb on - strand, within Ac3H11_827at 110.993 kb on - strand, within Ac3H11_827at 110.993 kb on - strand, within Ac3H11_827at 110.993 kb on - strand, within Ac3H11_827at 110.993 kb on - strand, within Ac3H11_827at 110.993 kb on - strand, within Ac3H11_827at 110.993 kb on - strand, within Ac3H11_827at 110.993 kb on - strand, within Ac3H11_827at 110.993 kb on - strand, within Ac3H11_827at 110.993 kb on - strand, within Ac3H11_827at 110.993 kb on - strand, within Ac3H11_827at 110.993 kb on - strand, within Ac3H11_827at 111.472 kb on + strand, within Ac3H11_827at 111.523 kb on + strand, within Ac3H11_827at 111.524 kb on - strand, within Ac3H11_827at 111.524 kb on - strand, within Ac3H11_827at 111.524 kb on - strand, within Ac3H11_827at 111.524 kb on - strand, within Ac3H11_827at 111.524 kb on - strand, within Ac3H11_827at 111.559 kb on + strand, within Ac3H11_827at 111.837 kb on + strandat 111.837 kb on + strandat 111.837 kb on + strandat 111.837 kb on + strandat 111.837 kb on + strandat 111.838 kb on - strandat 111.838 kb on - strandat 111.838 kb on - strandat 111.838 kb on - strandat 111.838 kb on - strandat 111.838 kb on - strandat 111.838 kb on - strandat 111.843 kb on + strandat 111.843 kb on + strandat 111.843 kb on + strandat 111.843 kb on + strandat 111.843 kb on + strandat 111.843 kb on + strandat 111.844 kb on - strandat 111.844 kb on - strandat 111.844 kb on - strandat 111.851 kb on + strandat 111.851 kb on + strandat 111.851 kb on + strandat 111.851 kb on + strandat 111.899 kb on + strandat 111.899 kb on + strandat 112.003 kb on + strandat 112.003 kb on + strandat 112.003 kb on + strandat 112.004 kb on - strandat 112.004 kb on - strandat 112.015 kb on + strandat 112.016 kb on - strandat 112.016 kb on - strandat 112.048 kb on + strandat 112.048 kb on + strandat 112.048 kb on + strandat 112.048 kb on + strandat 112.048 kb on + strandat 112.048 kb on + strandat 112.048 kb on + strandat 112.048 kb on + strandat 112.048 kb on + strandat 112.049 kb on - strandat 112.049 kb on - strandat 112.049 kb on - strandat 112.049 kb on - strandat 112.049 kb on - strandat 112.049 kb on - strandat 112.049 kb on - strandat 112.183 kb on + strand, within Ac3H11_828at 112.183 kb on + strand, within Ac3H11_828at 112.183 kb on + strand, within Ac3H11_828at 112.183 kb on + strand, within Ac3H11_828at 112.183 kb on + strand, within Ac3H11_828at 112.183 kb on + strand, within Ac3H11_828at 112.183 kb on + strand, within Ac3H11_828at 112.183 kb on + strand, within Ac3H11_828at 112.183 kb on + strand, within Ac3H11_828at 112.183 kb on + strand, within Ac3H11_828at 112.184 kb on - strand, within Ac3H11_828at 112.184 kb on - strand, within Ac3H11_828at 112.184 kb on - strand, within Ac3H11_828at 112.184 kb on - strand, within Ac3H11_828at 112.184 kb on - strand, within Ac3H11_828at 112.184 kb on - strand, within Ac3H11_828at 112.184 kb on - strand, within Ac3H11_828at 112.184 kb on - strand, within Ac3H11_828at 112.184 kb on - strand, within Ac3H11_828at 112.184 kb on - strand, within Ac3H11_828at 112.184 kb on - strand, within Ac3H11_828at 112.184 kb on - strand, within Ac3H11_828at 112.355 kb on - strand, within Ac3H11_828at 112.627 kb on + strand, within Ac3H11_828at 112.627 kb on + strand, within Ac3H11_828at 112.628 kb on - strand, within Ac3H11_828at 112.628 kb on - strand, within Ac3H11_828at 112.628 kb on - strand, within Ac3H11_828at 112.690 kb on + strand, within Ac3H11_828at 112.690 kb on + strand, within Ac3H11_828at 112.690 kb on + strand, within Ac3H11_828at 112.690 kb on + strand, within Ac3H11_828at 112.690 kb on + strand, within Ac3H11_828at 112.690 kb on + strand, within Ac3H11_828at 112.690 kb on + strand, within Ac3H11_828at 112.690 kb on + strand, within Ac3H11_828at 112.690 kb on + strand, within Ac3H11_828at 112.690 kb on + strand, within Ac3H11_828at 112.690 kb on + strand, within Ac3H11_828at 112.690 kb on + strand, within Ac3H11_828at 112.690 kb on + strand, within Ac3H11_828at 112.690 kb on + strand, within Ac3H11_828at 112.690 kb on + strand, within Ac3H11_828at 112.690 kb on + strand, within Ac3H11_828at 112.690 kb on + strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.691 kb on - strand, within Ac3H11_828at 112.696 kb on + strand, within Ac3H11_828at 112.696 kb on + strand, within Ac3H11_828at 112.696 kb on + strand, within Ac3H11_828at 112.696 kb on + strand, within Ac3H11_828at 112.696 kb on + strand, within Ac3H11_828at 112.697 kb on - strand, within Ac3H11_828at 112.697 kb on - strand, within Ac3H11_828at 112.697 kb on - strand, within Ac3H11_828at 112.697 kb on - strand, within Ac3H11_828at 112.721 kb on - strand, within Ac3H11_828at 112.721 kb on - strand, within Ac3H11_828at 112.721 kb on - strand, within Ac3H11_828at 112.780 kb on + strand, within Ac3H11_828at 112.780 kb on + strand, within Ac3H11_828at 112.780 kb on + strand, within Ac3H11_828at 112.780 kb on + strand, within Ac3H11_828at 112.780 kb on + strand, within Ac3H11_828at 112.780 kb on + strand, within Ac3H11_828at 112.780 kb on + strand, within Ac3H11_828at 112.780 kb on + strand, within Ac3H11_828at 112.781 kb on - strand, within Ac3H11_828at 112.781 kb on - strand, within Ac3H11_828at 112.781 kb on - strand, within Ac3H11_828at 112.781 kb on - strand, within Ac3H11_828at 112.781 kb on - strand, within Ac3H11_828at 112.781 kb on - strand, within Ac3H11_828at 112.781 kb on - strand, within Ac3H11_828at 112.781 kb on - strand, within Ac3H11_828at 112.816 kb on + strand, within Ac3H11_828at 112.816 kb on + strand, within Ac3H11_828at 112.817 kb on - strand, within Ac3H11_828

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 35 mM
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110,162 - Ac3H11_826 0.83 -0.8
110,199 + Ac3H11_826 0.86 +0.6
110,199 + Ac3H11_826 0.86 +0.1
110,199 + Ac3H11_826 0.86 +0.1
110,199 + Ac3H11_826 0.86 +0.0
110,199 + Ac3H11_826 0.86 -0.2
110,199 + Ac3H11_826 0.86 -0.5
110,199 + Ac3H11_826 0.86 +0.0
110,199 + Ac3H11_826 0.86 -0.6
110,199 + Ac3H11_826 0.86 +2.0
110,200 - Ac3H11_826 0.86 +0.4
110,200 - Ac3H11_826 0.86 -0.0
110,200 - Ac3H11_826 0.86 +0.1
110,200 - Ac3H11_826 0.86 -0.2
110,334 + +0.0
110,334 + -0.8
110,334 + +2.1
110,334 + -0.6
110,334 + -0.2
110,335 - +0.5
110,335 - -0.4
110,335 - -0.2
110,340 + +0.1
110,340 + +0.0
110,340 + -0.3
110,340 + +0.0
110,341 - +0.2
110,397 + +0.8
110,397 + -0.6
110,398 - -0.9
110,398 - -0.7
110,408 + -1.3
110,408 + +0.4
110,408 + -0.2
110,408 + +0.6
110,409 - +0.5
110,409 - +0.8
110,909 - Ac3H11_827 0.29 -0.1
110,992 + Ac3H11_827 0.35 +0.5
110,992 + Ac3H11_827 0.35 -1.4
110,992 + Ac3H11_827 0.35 +1.1
110,992 + Ac3H11_827 0.35 +1.1
110,992 + Ac3H11_827 0.35 +0.2
110,992 + Ac3H11_827 0.35 -0.4
110,992 + Ac3H11_827 0.35 -1.4
110,992 + Ac3H11_827 0.35 +1.3
110,993 - Ac3H11_827 0.35 +0.1
110,993 - Ac3H11_827 0.35 +0.4
110,993 - Ac3H11_827 0.35 +0.4
110,993 - Ac3H11_827 0.35 -0.3
110,993 - Ac3H11_827 0.35 +1.1
110,993 - Ac3H11_827 0.35 +1.6
110,993 - Ac3H11_827 0.35 +0.9
110,993 - Ac3H11_827 0.35 +0.4
110,993 - Ac3H11_827 0.35 -0.7
110,993 - Ac3H11_827 0.35 +0.9
110,993 - Ac3H11_827 0.35 +1.2
110,993 - Ac3H11_827 0.35 +0.9
111,472 + Ac3H11_827 0.71 +0.5
111,523 + Ac3H11_827 0.75 +1.5
111,524 - Ac3H11_827 0.75 -0.1
111,524 - Ac3H11_827 0.75 +0.3
111,524 - Ac3H11_827 0.75 +0.6
111,524 - Ac3H11_827 0.75 +0.6
111,524 - Ac3H11_827 0.75 -1.8
111,559 + Ac3H11_827 0.78 +1.3
111,837 + +0.7
111,837 + +1.3
111,837 + +2.0
111,837 + -0.3
111,837 + -0.6
111,838 - +1.2
111,838 - +0.8
111,838 - +0.4
111,838 - +0.4
111,838 - -0.7
111,838 - +0.5
111,838 - -0.7
111,843 + +0.8
111,843 + +1.0
111,843 + +0.9
111,843 + +1.9
111,843 + +0.8
111,843 + +0.5
111,844 - -0.2
111,844 - +0.9
111,844 - -0.4
111,851 + -0.2
111,851 + +0.1
111,851 + -0.1
111,851 + +1.4
111,899 + +0.1
111,899 + -0.3
112,003 + -0.4
112,003 + -0.7
112,003 + -0.6
112,004 - +0.9
112,004 - -1.1
112,015 + -0.1
112,016 - -0.2
112,016 - +1.1
112,048 + -0.4
112,048 + -0.0
112,048 + -1.4
112,048 + -0.3
112,048 + -0.1
112,048 + -0.9
112,048 + +2.1
112,048 + -0.1
112,048 + -1.1
112,049 - +0.4
112,049 - -0.1
112,049 - +0.5
112,049 - +0.3
112,049 - +0.1
112,049 - -0.4
112,049 - -0.1
112,183 + Ac3H11_828 0.20 -0.3
112,183 + Ac3H11_828 0.20 -0.8
112,183 + Ac3H11_828 0.20 +0.3
112,183 + Ac3H11_828 0.20 +0.1
112,183 + Ac3H11_828 0.20 -0.5
112,183 + Ac3H11_828 0.20 +0.6
112,183 + Ac3H11_828 0.20 +1.4
112,183 + Ac3H11_828 0.20 +0.2
112,183 + Ac3H11_828 0.20 -0.5
112,183 + Ac3H11_828 0.20 -1.1
112,184 - Ac3H11_828 0.20 -0.5
112,184 - Ac3H11_828 0.20 -0.9
112,184 - Ac3H11_828 0.20 -1.8
112,184 - Ac3H11_828 0.20 +1.2
112,184 - Ac3H11_828 0.20 -0.1
112,184 - Ac3H11_828 0.20 -0.9
112,184 - Ac3H11_828 0.20 +0.2
112,184 - Ac3H11_828 0.20 +0.2
112,184 - Ac3H11_828 0.20 +0.6
112,184 - Ac3H11_828 0.20 +0.4
112,184 - Ac3H11_828 0.20 +0.3
112,184 - Ac3H11_828 0.20 +0.2
112,355 - Ac3H11_828 0.35 +0.6
112,627 + Ac3H11_828 0.58 -0.8
112,627 + Ac3H11_828 0.58 +0.3
112,628 - Ac3H11_828 0.58 +0.7
112,628 - Ac3H11_828 0.58 +0.0
112,628 - Ac3H11_828 0.58 -1.1
112,690 + Ac3H11_828 0.63 +0.1
112,690 + Ac3H11_828 0.63 +0.5
112,690 + Ac3H11_828 0.63 -0.5
112,690 + Ac3H11_828 0.63 -0.3
112,690 + Ac3H11_828 0.63 +1.2
112,690 + Ac3H11_828 0.63 -1.4
112,690 + Ac3H11_828 0.63 +0.3
112,690 + Ac3H11_828 0.63 -0.5
112,690 + Ac3H11_828 0.63 +0.4
112,690 + Ac3H11_828 0.63 -0.7
112,690 + Ac3H11_828 0.63 -0.4
112,690 + Ac3H11_828 0.63 +0.8
112,690 + Ac3H11_828 0.63 +0.5
112,690 + Ac3H11_828 0.63 -0.9
112,690 + Ac3H11_828 0.63 +0.1
112,690 + Ac3H11_828 0.63 -0.3
112,690 + Ac3H11_828 0.63 +0.8
112,691 - Ac3H11_828 0.63 +0.5
112,691 - Ac3H11_828 0.63 +0.3
112,691 - Ac3H11_828 0.63 +1.9
112,691 - Ac3H11_828 0.63 -0.4
112,691 - Ac3H11_828 0.63 -0.8
112,691 - Ac3H11_828 0.63 +0.1
112,691 - Ac3H11_828 0.63 -0.4
112,691 - Ac3H11_828 0.63 +0.9
112,691 - Ac3H11_828 0.63 +0.0
112,691 - Ac3H11_828 0.63 -0.5
112,691 - Ac3H11_828 0.63 +2.0
112,691 - Ac3H11_828 0.63 +0.2
112,691 - Ac3H11_828 0.63 -1.3
112,691 - Ac3H11_828 0.63 +0.7
112,691 - Ac3H11_828 0.63 +0.1
112,691 - Ac3H11_828 0.63 -0.0
112,691 - Ac3H11_828 0.63 +0.2
112,691 - Ac3H11_828 0.63 -0.4
112,691 - Ac3H11_828 0.63 -0.4
112,691 - Ac3H11_828 0.63 +0.4
112,691 - Ac3H11_828 0.63 -0.3
112,691 - Ac3H11_828 0.63 +0.5
112,696 + Ac3H11_828 0.63 +0.6
112,696 + Ac3H11_828 0.63 -0.3
112,696 + Ac3H11_828 0.63 +1.6
112,696 + Ac3H11_828 0.63 +0.4
112,696 + Ac3H11_828 0.63 -0.6
112,697 - Ac3H11_828 0.64 -0.1
112,697 - Ac3H11_828 0.64 +0.7
112,697 - Ac3H11_828 0.64 +0.3
112,697 - Ac3H11_828 0.64 -0.7
112,721 - Ac3H11_828 0.66 -1.5
112,721 - Ac3H11_828 0.66 -0.6
112,721 - Ac3H11_828 0.66 +0.2
112,780 + Ac3H11_828 0.71 -0.2
112,780 + Ac3H11_828 0.71 +0.6
112,780 + Ac3H11_828 0.71 +2.2
112,780 + Ac3H11_828 0.71 +0.6
112,780 + Ac3H11_828 0.71 -0.3
112,780 + Ac3H11_828 0.71 +0.3
112,780 + Ac3H11_828 0.71 -0.1
112,780 + Ac3H11_828 0.71 +0.6
112,781 - Ac3H11_828 0.71 +0.1
112,781 - Ac3H11_828 0.71 +0.7
112,781 - Ac3H11_828 0.71 +0.1
112,781 - Ac3H11_828 0.71 -0.4
112,781 - Ac3H11_828 0.71 -2.5
112,781 - Ac3H11_828 0.71 -0.9
112,781 - Ac3H11_828 0.71 +0.2
112,781 - Ac3H11_828 0.71 -0.3
112,816 + Ac3H11_828 0.74 +0.2
112,816 + Ac3H11_828 0.74 +0.1
112,817 - Ac3H11_828 0.74 +0.4

Or see this region's nucleotide sequence