Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_683

Experiment: sodium fluoride 35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_681 and Ac3H11_682 are separated by 108 nucleotidesAc3H11_682 and Ac3H11_683 are separated by 60 nucleotidesAc3H11_683 and Ac3H11_684 are separated by 179 nucleotidesAc3H11_684 and Ac3H11_685 are separated by 88 nucleotides Ac3H11_681 - Ribosome hibernation protein YhbH, at 38,493 to 38,828 _681 Ac3H11_682 - PTS system nitrogen-specific IIA component, PtsN, at 38,937 to 39,410 _682 Ac3H11_683 - HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-), at 39,471 to 40,427 _683 Ac3H11_684 - Ferric uptake regulation protein FUR, at 40,607 to 41,023 _684 Ac3H11_685 - Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex, at 41,112 to 41,675 _685 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1at 38.477 kb on + strandat 38.477 kb on + strandat 38.477 kb on + strandat 38.477 kb on + strandat 38.477 kb on + strandat 38.477 kb on + strandat 38.477 kb on + strandat 38.477 kb on + strandat 38.478 kb on - strandat 38.478 kb on - strandat 38.488 kb on + strandat 38.488 kb on + strandat 38.488 kb on + strandat 38.488 kb on + strandat 38.488 kb on + strandat 38.488 kb on + strandat 38.488 kb on + strandat 38.488 kb on + strandat 38.489 kb on - strandat 38.489 kb on - strandat 38.489 kb on - strandat 38.489 kb on - strandat 38.489 kb on - strandat 38.489 kb on - strandat 38.492 kb on + strandat 38.492 kb on + strandat 38.492 kb on + strandat 38.492 kb on + strandat 38.492 kb on + strandat 38.493 kb on - strandat 38.493 kb on - strandat 38.493 kb on - strandat 38.493 kb on - strandat 38.493 kb on - strandat 38.529 kb on - strand, within Ac3H11_681at 38.547 kb on + strand, within Ac3H11_681at 38.547 kb on + strand, within Ac3H11_681at 38.547 kb on + strand, within Ac3H11_681at 38.547 kb on + strand, within Ac3H11_681at 38.547 kb on + strand, within Ac3H11_681at 38.547 kb on + strand, within Ac3H11_681at 38.547 kb on + strand, within Ac3H11_681at 38.547 kb on + strand, within Ac3H11_681at 38.547 kb on + strand, within Ac3H11_681at 38.547 kb on + strand, within Ac3H11_681at 38.547 kb on + strand, within Ac3H11_681at 38.547 kb on + strand, within Ac3H11_681at 38.547 kb on + strand, within Ac3H11_681at 38.547 kb on + strand, within Ac3H11_681at 38.547 kb on + strand, within Ac3H11_681at 38.547 kb on + strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.548 kb on - strand, within Ac3H11_681at 38.608 kb on + strand, within Ac3H11_681at 38.608 kb on + strand, within Ac3H11_681at 38.608 kb on + strand, within Ac3H11_681at 38.608 kb on + strand, within Ac3H11_681at 38.608 kb on + strand, within Ac3H11_681at 38.608 kb on + strand, within Ac3H11_681at 38.608 kb on + strand, within Ac3H11_681at 38.609 kb on - strand, within Ac3H11_681at 38.609 kb on - strand, within Ac3H11_681at 38.621 kb on - strand, within Ac3H11_681at 38.621 kb on - strand, within Ac3H11_681at 38.621 kb on - strand, within Ac3H11_681at 38.718 kb on + strand, within Ac3H11_681at 38.718 kb on + strand, within Ac3H11_681at 38.718 kb on + strand, within Ac3H11_681at 38.718 kb on + strand, within Ac3H11_681at 38.718 kb on + strand, within Ac3H11_681at 38.718 kb on + strand, within Ac3H11_681at 38.719 kb on - strand, within Ac3H11_681at 38.719 kb on - strand, within Ac3H11_681at 38.719 kb on - strand, within Ac3H11_681at 38.719 kb on - strand, within Ac3H11_681at 38.719 kb on - strand, within Ac3H11_681at 38.719 kb on - strand, within Ac3H11_681at 38.918 kb on - strandat 38.918 kb on - strandat 38.918 kb on - strandat 38.918 kb on - strandat 38.918 kb on - strandat 38.925 kb on + strandat 38.925 kb on + strandat 38.925 kb on + strandat 39.630 kb on + strand, within Ac3H11_683at 39.870 kb on + strand, within Ac3H11_683at 40.437 kb on + strandat 40.453 kb on - strandat 40.504 kb on + strandat 40.505 kb on - strandat 41.092 kb on + strandat 41.093 kb on - strandat 41.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 35 mM
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38,477 + -2.0
38,477 + -0.3
38,477 + -0.7
38,477 + +0.2
38,477 + -0.9
38,477 + -0.3
38,477 + -0.5
38,477 + -0.8
38,478 - -0.3
38,478 - -0.1
38,488 + -0.1
38,488 + +0.7
38,488 + +0.6
38,488 + -0.7
38,488 + -0.4
38,488 + +0.8
38,488 + +0.1
38,488 + +0.2
38,489 - -0.8
38,489 - -0.2
38,489 - -0.0
38,489 - +0.3
38,489 - -0.3
38,489 - +1.6
38,492 + +0.2
38,492 + +0.2
38,492 + -0.7
38,492 + -0.2
38,492 + -0.0
38,493 - +0.1
38,493 - -0.1
38,493 - +0.2
38,493 - +0.2
38,493 - -0.4
38,529 - Ac3H11_681 0.11 +0.1
38,547 + Ac3H11_681 0.16 -0.1
38,547 + Ac3H11_681 0.16 +0.0
38,547 + Ac3H11_681 0.16 -0.2
38,547 + Ac3H11_681 0.16 -0.2
38,547 + Ac3H11_681 0.16 +1.4
38,547 + Ac3H11_681 0.16 -0.5
38,547 + Ac3H11_681 0.16 -0.3
38,547 + Ac3H11_681 0.16 +0.5
38,547 + Ac3H11_681 0.16 +0.6
38,547 + Ac3H11_681 0.16 +0.3
38,547 + Ac3H11_681 0.16 -0.1
38,547 + Ac3H11_681 0.16 -0.0
38,547 + Ac3H11_681 0.16 +0.6
38,547 + Ac3H11_681 0.16 -0.7
38,547 + Ac3H11_681 0.16 +0.6
38,547 + Ac3H11_681 0.16 -0.3
38,548 - Ac3H11_681 0.16 +0.1
38,548 - Ac3H11_681 0.16 -0.8
38,548 - Ac3H11_681 0.16 +0.2
38,548 - Ac3H11_681 0.16 -0.7
38,548 - Ac3H11_681 0.16 +0.0
38,548 - Ac3H11_681 0.16 +0.2
38,548 - Ac3H11_681 0.16 +0.2
38,548 - Ac3H11_681 0.16 +0.3
38,548 - Ac3H11_681 0.16 -0.4
38,548 - Ac3H11_681 0.16 +0.3
38,548 - Ac3H11_681 0.16 -0.1
38,548 - Ac3H11_681 0.16 -0.4
38,548 - Ac3H11_681 0.16 -0.2
38,548 - Ac3H11_681 0.16 -0.6
38,548 - Ac3H11_681 0.16 -0.0
38,548 - Ac3H11_681 0.16 -0.2
38,548 - Ac3H11_681 0.16 +0.7
38,548 - Ac3H11_681 0.16 -0.3
38,548 - Ac3H11_681 0.16 +0.4
38,548 - Ac3H11_681 0.16 +0.8
38,548 - Ac3H11_681 0.16 +0.2
38,548 - Ac3H11_681 0.16 +0.3
38,548 - Ac3H11_681 0.16 -0.6
38,548 - Ac3H11_681 0.16 +0.4
38,608 + Ac3H11_681 0.34 -0.1
38,608 + Ac3H11_681 0.34 -1.5
38,608 + Ac3H11_681 0.34 +0.2
38,608 + Ac3H11_681 0.34 -0.6
38,608 + Ac3H11_681 0.34 -0.0
38,608 + Ac3H11_681 0.34 +0.3
38,608 + Ac3H11_681 0.34 +0.2
38,609 - Ac3H11_681 0.35 -0.5
38,609 - Ac3H11_681 0.35 -0.5
38,621 - Ac3H11_681 0.38 +0.2
38,621 - Ac3H11_681 0.38 -0.1
38,621 - Ac3H11_681 0.38 +0.5
38,718 + Ac3H11_681 0.67 +0.1
38,718 + Ac3H11_681 0.67 +0.3
38,718 + Ac3H11_681 0.67 +0.6
38,718 + Ac3H11_681 0.67 +0.7
38,718 + Ac3H11_681 0.67 -0.1
38,718 + Ac3H11_681 0.67 +0.8
38,719 - Ac3H11_681 0.67 -0.2
38,719 - Ac3H11_681 0.67 +0.2
38,719 - Ac3H11_681 0.67 -0.3
38,719 - Ac3H11_681 0.67 +0.2
38,719 - Ac3H11_681 0.67 +0.2
38,719 - Ac3H11_681 0.67 +0.6
38,918 - -0.4
38,918 - +0.1
38,918 - -0.3
38,918 - +0.2
38,918 - -0.3
38,925 + -0.5
38,925 + -2.0
38,925 + -1.2
39,630 + Ac3H11_683 0.17 +0.3
39,870 + Ac3H11_683 0.42 +0.9
40,437 + +0.2
40,453 - +1.1
40,504 + +0.3
40,505 - +0.3
41,092 + +0.4
41,093 - -1.7
41,093 - +0.3

Or see this region's nucleotide sequence