Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4647

Experiment: sodium fluoride 35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4646 and Ac3H11_4647 are separated by 163 nucleotidesAc3H11_4647 and Ac3H11_4648 are separated by 118 nucleotides Ac3H11_4646 - Chaperone protein HtpG, at 253,327 to 255,303 _4646 Ac3H11_4647 - hypothetical protein, at 255,467 to 255,775 _4647 Ac3H11_4648 - DNA-binding response regulator, at 255,894 to 256,676 _4648 Position (kb) 255 256Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 254.478 kb on + strand, within Ac3H11_4646at 254.478 kb on + strand, within Ac3H11_4646at 254.478 kb on + strand, within Ac3H11_4646at 254.479 kb on - strand, within Ac3H11_4646at 254.554 kb on + strand, within Ac3H11_4646at 254.554 kb on + strand, within Ac3H11_4646at 254.554 kb on + strand, within Ac3H11_4646at 254.554 kb on + strand, within Ac3H11_4646at 254.555 kb on - strand, within Ac3H11_4646at 254.555 kb on - strand, within Ac3H11_4646at 254.555 kb on - strand, within Ac3H11_4646at 254.566 kb on + strand, within Ac3H11_4646at 254.566 kb on + strand, within Ac3H11_4646at 254.567 kb on - strand, within Ac3H11_4646at 254.567 kb on - strand, within Ac3H11_4646at 254.692 kb on + strand, within Ac3H11_4646at 254.692 kb on + strand, within Ac3H11_4646at 254.692 kb on + strand, within Ac3H11_4646at 254.693 kb on - strand, within Ac3H11_4646at 254.693 kb on - strand, within Ac3H11_4646at 254.693 kb on - strand, within Ac3H11_4646at 254.693 kb on - strand, within Ac3H11_4646at 254.693 kb on - strand, within Ac3H11_4646at 254.693 kb on - strand, within Ac3H11_4646at 254.693 kb on - strand, within Ac3H11_4646at 254.728 kb on + strand, within Ac3H11_4646at 254.728 kb on + strand, within Ac3H11_4646at 254.728 kb on + strand, within Ac3H11_4646at 254.728 kb on + strand, within Ac3H11_4646at 254.728 kb on + strand, within Ac3H11_4646at 254.729 kb on - strand, within Ac3H11_4646at 254.729 kb on - strand, within Ac3H11_4646at 254.729 kb on - strand, within Ac3H11_4646at 254.729 kb on - strand, within Ac3H11_4646at 254.729 kb on - strand, within Ac3H11_4646at 254.731 kb on + strand, within Ac3H11_4646at 254.731 kb on + strand, within Ac3H11_4646at 254.731 kb on + strand, within Ac3H11_4646at 254.731 kb on + strand, within Ac3H11_4646at 254.732 kb on - strand, within Ac3H11_4646at 254.848 kb on + strand, within Ac3H11_4646at 254.848 kb on + strand, within Ac3H11_4646at 254.848 kb on + strand, within Ac3H11_4646at 254.848 kb on + strand, within Ac3H11_4646at 254.848 kb on + strand, within Ac3H11_4646at 254.849 kb on - strand, within Ac3H11_4646at 254.849 kb on - strand, within Ac3H11_4646at 254.849 kb on - strand, within Ac3H11_4646at 254.849 kb on - strand, within Ac3H11_4646at 255.271 kb on + strandat 255.271 kb on + strandat 255.271 kb on + strandat 255.271 kb on + strandat 255.272 kb on - strandat 255.272 kb on - strandat 255.272 kb on - strandat 255.272 kb on - strandat 255.504 kb on + strand, within Ac3H11_4647at 255.504 kb on + strand, within Ac3H11_4647at 255.504 kb on + strand, within Ac3H11_4647at 255.505 kb on - strand, within Ac3H11_4647at 255.505 kb on - strand, within Ac3H11_4647at 255.505 kb on - strand, within Ac3H11_4647at 255.505 kb on - strand, within Ac3H11_4647at 255.671 kb on + strand, within Ac3H11_4647at 255.761 kb on + strandat 255.809 kb on + strandat 255.810 kb on - strandat 255.882 kb on + strandat 256.027 kb on + strand, within Ac3H11_4648at 256.028 kb on - strand, within Ac3H11_4648at 256.028 kb on - strand, within Ac3H11_4648at 256.028 kb on - strand, within Ac3H11_4648at 256.045 kb on + strand, within Ac3H11_4648at 256.277 kb on - strand, within Ac3H11_4648at 256.315 kb on + strand, within Ac3H11_4648at 256.315 kb on + strand, within Ac3H11_4648at 256.592 kb on + strand, within Ac3H11_4648at 256.592 kb on + strand, within Ac3H11_4648at 256.593 kb on - strand, within Ac3H11_4648at 256.593 kb on - strand, within Ac3H11_4648at 256.593 kb on - strand, within Ac3H11_4648at 256.593 kb on - strand, within Ac3H11_4648at 256.715 kb on + strandat 256.715 kb on + strandat 256.715 kb on + strandat 256.715 kb on + strandat 256.716 kb on - strandat 256.716 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 35 mM
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254,478 + Ac3H11_4646 0.58 +0.2
254,478 + Ac3H11_4646 0.58 +0.6
254,478 + Ac3H11_4646 0.58 +0.6
254,479 - Ac3H11_4646 0.58 -0.1
254,554 + Ac3H11_4646 0.62 -0.6
254,554 + Ac3H11_4646 0.62 -0.3
254,554 + Ac3H11_4646 0.62 +1.0
254,554 + Ac3H11_4646 0.62 +0.4
254,555 - Ac3H11_4646 0.62 -0.6
254,555 - Ac3H11_4646 0.62 +1.6
254,555 - Ac3H11_4646 0.62 +1.4
254,566 + Ac3H11_4646 0.63 -0.5
254,566 + Ac3H11_4646 0.63 -0.2
254,567 - Ac3H11_4646 0.63 -0.1
254,567 - Ac3H11_4646 0.63 +0.1
254,692 + Ac3H11_4646 0.69 -0.4
254,692 + Ac3H11_4646 0.69 +0.1
254,692 + Ac3H11_4646 0.69 +0.8
254,693 - Ac3H11_4646 0.69 +0.9
254,693 - Ac3H11_4646 0.69 +0.4
254,693 - Ac3H11_4646 0.69 -0.5
254,693 - Ac3H11_4646 0.69 +0.0
254,693 - Ac3H11_4646 0.69 -1.1
254,693 - Ac3H11_4646 0.69 -1.5
254,693 - Ac3H11_4646 0.69 -1.1
254,728 + Ac3H11_4646 0.71 +0.6
254,728 + Ac3H11_4646 0.71 -1.1
254,728 + Ac3H11_4646 0.71 +1.6
254,728 + Ac3H11_4646 0.71 -1.8
254,728 + Ac3H11_4646 0.71 +0.4
254,729 - Ac3H11_4646 0.71 -0.7
254,729 - Ac3H11_4646 0.71 -0.2
254,729 - Ac3H11_4646 0.71 +0.2
254,729 - Ac3H11_4646 0.71 +0.9
254,729 - Ac3H11_4646 0.71 -0.2
254,731 + Ac3H11_4646 0.71 +0.4
254,731 + Ac3H11_4646 0.71 +1.3
254,731 + Ac3H11_4646 0.71 +0.6
254,731 + Ac3H11_4646 0.71 +0.2
254,732 - Ac3H11_4646 0.71 +0.8
254,848 + Ac3H11_4646 0.77 +0.7
254,848 + Ac3H11_4646 0.77 +0.0
254,848 + Ac3H11_4646 0.77 -1.9
254,848 + Ac3H11_4646 0.77 -0.1
254,848 + Ac3H11_4646 0.77 +0.5
254,849 - Ac3H11_4646 0.77 -0.9
254,849 - Ac3H11_4646 0.77 +0.7
254,849 - Ac3H11_4646 0.77 -0.4
254,849 - Ac3H11_4646 0.77 +1.3
255,271 + +0.1
255,271 + +0.4
255,271 + -0.2
255,271 + +1.2
255,272 - -0.9
255,272 - +0.2
255,272 - -0.0
255,272 - +0.6
255,504 + Ac3H11_4647 0.12 +4.0
255,504 + Ac3H11_4647 0.12 +1.0
255,504 + Ac3H11_4647 0.12 +0.2
255,505 - Ac3H11_4647 0.12 -0.5
255,505 - Ac3H11_4647 0.12 +1.3
255,505 - Ac3H11_4647 0.12 +0.6
255,505 - Ac3H11_4647 0.12 +0.7
255,671 + Ac3H11_4647 0.66 +0.2
255,761 + -0.1
255,809 + +0.8
255,810 - -0.6
255,882 + -0.7
256,027 + Ac3H11_4648 0.17 -0.6
256,028 - Ac3H11_4648 0.17 +0.0
256,028 - Ac3H11_4648 0.17 -1.0
256,028 - Ac3H11_4648 0.17 +0.1
256,045 + Ac3H11_4648 0.19 -0.0
256,277 - Ac3H11_4648 0.49 -0.1
256,315 + Ac3H11_4648 0.54 -0.8
256,315 + Ac3H11_4648 0.54 +0.0
256,592 + Ac3H11_4648 0.89 -1.0
256,592 + Ac3H11_4648 0.89 -0.7
256,593 - Ac3H11_4648 0.89 +0.7
256,593 - Ac3H11_4648 0.89 +0.4
256,593 - Ac3H11_4648 0.89 +0.5
256,593 - Ac3H11_4648 0.89 +0.3
256,715 + -0.1
256,715 + +0.6
256,715 + +0.1
256,715 + -0.6
256,716 - -0.1
256,716 - +0.1

Or see this region's nucleotide sequence