Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4491

Experiment: sodium fluoride 35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4490 and Ac3H11_4491 are separated by 21 nucleotidesAc3H11_4491 and Ac3H11_4492 are separated by 46 nucleotides Ac3H11_4490 - Nitrate/nitrite transporter, at 78,996 to 80,288 _4490 Ac3H11_4491 - Nitrate/nitrite transporter, at 80,310 to 81,719 _4491 Ac3H11_4492 - Respiratory nitrate reductase alpha chain (EC 1.7.99.4), at 81,766 to 85,566 _4492 Position (kb) 80 81 82Strain fitness (log2 ratio) -2 -1 0 1 2at 79.317 kb on + strand, within Ac3H11_4490at 79.379 kb on + strand, within Ac3H11_4490at 79.380 kb on - strand, within Ac3H11_4490at 79.386 kb on + strand, within Ac3H11_4490at 79.386 kb on + strand, within Ac3H11_4490at 79.386 kb on + strand, within Ac3H11_4490at 79.386 kb on + strand, within Ac3H11_4490at 79.386 kb on + strand, within Ac3H11_4490at 79.387 kb on - strand, within Ac3H11_4490at 79.387 kb on - strand, within Ac3H11_4490at 79.527 kb on + strand, within Ac3H11_4490at 79.527 kb on + strand, within Ac3H11_4490at 79.528 kb on - strand, within Ac3H11_4490at 79.528 kb on - strand, within Ac3H11_4490at 79.528 kb on - strand, within Ac3H11_4490at 79.659 kb on + strand, within Ac3H11_4490at 79.659 kb on + strand, within Ac3H11_4490at 79.660 kb on - strand, within Ac3H11_4490at 79.660 kb on - strand, within Ac3H11_4490at 79.660 kb on - strand, within Ac3H11_4490at 79.668 kb on + strand, within Ac3H11_4490at 79.668 kb on + strand, within Ac3H11_4490at 79.668 kb on + strand, within Ac3H11_4490at 79.669 kb on - strand, within Ac3H11_4490at 79.669 kb on - strand, within Ac3H11_4490at 79.669 kb on - strand, within Ac3H11_4490at 79.671 kb on + strand, within Ac3H11_4490at 79.671 kb on + strand, within Ac3H11_4490at 79.671 kb on + strand, within Ac3H11_4490at 79.671 kb on + strand, within Ac3H11_4490at 79.671 kb on + strand, within Ac3H11_4490at 79.672 kb on - strand, within Ac3H11_4490at 79.692 kb on + strand, within Ac3H11_4490at 79.693 kb on - strand, within Ac3H11_4490at 79.722 kb on + strand, within Ac3H11_4490at 79.722 kb on + strand, within Ac3H11_4490at 79.723 kb on - strand, within Ac3H11_4490at 79.723 kb on - strand, within Ac3H11_4490at 79.723 kb on - strand, within Ac3H11_4490at 79.723 kb on - strand, within Ac3H11_4490at 79.723 kb on - strand, within Ac3H11_4490at 79.723 kb on - strand, within Ac3H11_4490at 79.725 kb on + strand, within Ac3H11_4490at 79.725 kb on + strand, within Ac3H11_4490at 79.725 kb on + strand, within Ac3H11_4490at 79.725 kb on + strand, within Ac3H11_4490at 79.725 kb on + strand, within Ac3H11_4490at 79.725 kb on + strand, within Ac3H11_4490at 79.726 kb on - strand, within Ac3H11_4490at 79.726 kb on - strand, within Ac3H11_4490at 79.726 kb on - strand, within Ac3H11_4490at 79.726 kb on - strand, within Ac3H11_4490at 79.726 kb on - strand, within Ac3H11_4490at 79.726 kb on - strand, within Ac3H11_4490at 79.738 kb on - strand, within Ac3H11_4490at 79.738 kb on - strand, within Ac3H11_4490at 79.738 kb on - strand, within Ac3H11_4490at 79.833 kb on + strand, within Ac3H11_4490at 79.833 kb on + strand, within Ac3H11_4490at 79.833 kb on + strand, within Ac3H11_4490at 79.833 kb on + strand, within Ac3H11_4490at 79.833 kb on + strand, within Ac3H11_4490at 79.833 kb on + strand, within Ac3H11_4490at 79.834 kb on - strand, within Ac3H11_4490at 79.968 kb on + strand, within Ac3H11_4490at 79.968 kb on + strand, within Ac3H11_4490at 79.968 kb on + strand, within Ac3H11_4490at 79.968 kb on + strand, within Ac3H11_4490at 79.968 kb on + strand, within Ac3H11_4490at 79.968 kb on + strand, within Ac3H11_4490at 79.969 kb on - strand, within Ac3H11_4490at 79.969 kb on - strand, within Ac3H11_4490at 79.969 kb on - strand, within Ac3H11_4490at 79.969 kb on - strand, within Ac3H11_4490at 79.969 kb on - strand, within Ac3H11_4490at 80.037 kb on + strand, within Ac3H11_4490at 80.038 kb on - strand, within Ac3H11_4490at 80.038 kb on - strand, within Ac3H11_4490at 80.038 kb on - strand, within Ac3H11_4490at 80.184 kb on + strandat 80.184 kb on + strandat 80.184 kb on + strandat 80.184 kb on + strandat 80.185 kb on - strandat 80.185 kb on - strandat 80.185 kb on - strandat 80.185 kb on - strandat 80.185 kb on - strandat 80.218 kb on - strandat 80.218 kb on - strandat 80.511 kb on + strand, within Ac3H11_4491at 80.511 kb on + strand, within Ac3H11_4491at 80.511 kb on + strand, within Ac3H11_4491at 80.512 kb on - strand, within Ac3H11_4491at 80.581 kb on - strand, within Ac3H11_4491at 80.581 kb on - strand, within Ac3H11_4491at 81.022 kb on - strand, within Ac3H11_4491at 81.102 kb on + strand, within Ac3H11_4491at 81.132 kb on + strand, within Ac3H11_4491at 81.133 kb on - strand, within Ac3H11_4491at 81.192 kb on + strand, within Ac3H11_4491at 81.193 kb on - strand, within Ac3H11_4491at 81.193 kb on - strand, within Ac3H11_4491at 81.564 kb on + strand, within Ac3H11_4491at 81.564 kb on + strand, within Ac3H11_4491at 81.591 kb on + strandat 81.591 kb on + strandat 81.592 kb on - strandat 81.654 kb on + strandat 81.655 kb on - strandat 81.655 kb on - strandat 81.655 kb on - strandat 81.675 kb on - strandat 81.675 kb on - strandat 81.675 kb on - strandat 81.675 kb on - strandat 81.685 kb on - strandat 81.687 kb on + strandat 81.688 kb on - strandat 81.688 kb on - strandat 81.793 kb on + strandat 81.793 kb on + strandat 81.793 kb on + strandat 81.793 kb on + strandat 81.794 kb on - strandat 81.952 kb on + strandat 81.953 kb on - strandat 81.953 kb on - strandat 81.953 kb on - strandat 82.061 kb on - strandat 82.070 kb on - strandat 82.070 kb on - strandat 82.075 kb on + strandat 82.075 kb on + strandat 82.075 kb on + strandat 82.075 kb on + strandat 82.076 kb on - strandat 82.096 kb on + strandat 82.096 kb on + strandat 82.291 kb on + strand, within Ac3H11_4492at 82.292 kb on - strand, within Ac3H11_4492at 82.292 kb on - strand, within Ac3H11_4492at 82.363 kb on + strand, within Ac3H11_4492at 82.363 kb on + strand, within Ac3H11_4492at 82.381 kb on + strand, within Ac3H11_4492at 82.382 kb on - strand, within Ac3H11_4492at 82.417 kb on + strand, within Ac3H11_4492at 82.417 kb on + strand, within Ac3H11_4492at 82.417 kb on + strand, within Ac3H11_4492at 82.417 kb on + strand, within Ac3H11_4492at 82.417 kb on + strand, within Ac3H11_4492at 82.417 kb on + strand, within Ac3H11_4492at 82.417 kb on + strand, within Ac3H11_4492at 82.417 kb on + strand, within Ac3H11_4492at 82.418 kb on - strand, within Ac3H11_4492at 82.418 kb on - strand, within Ac3H11_4492at 82.418 kb on - strand, within Ac3H11_4492at 82.418 kb on - strand, within Ac3H11_4492at 82.426 kb on + strand, within Ac3H11_4492at 82.426 kb on + strand, within Ac3H11_4492at 82.498 kb on + strand, within Ac3H11_4492at 82.499 kb on - strand, within Ac3H11_4492at 82.499 kb on - strand, within Ac3H11_4492at 82.499 kb on - strand, within Ac3H11_4492at 82.510 kb on + strand, within Ac3H11_4492at 82.510 kb on + strand, within Ac3H11_4492at 82.510 kb on + strand, within Ac3H11_4492at 82.510 kb on + strand, within Ac3H11_4492at 82.510 kb on + strand, within Ac3H11_4492at 82.511 kb on - strand, within Ac3H11_4492at 82.511 kb on - strand, within Ac3H11_4492at 82.511 kb on - strand, within Ac3H11_4492at 82.511 kb on - strand, within Ac3H11_4492at 82.511 kb on - strand, within Ac3H11_4492at 82.511 kb on - strand, within Ac3H11_4492at 82.511 kb on - strand, within Ac3H11_4492at 82.511 kb on - strand, within Ac3H11_4492at 82.582 kb on + strand, within Ac3H11_4492at 82.582 kb on + strand, within Ac3H11_4492at 82.582 kb on + strand, within Ac3H11_4492at 82.582 kb on + strand, within Ac3H11_4492at 82.583 kb on - strand, within Ac3H11_4492at 82.583 kb on - strand, within Ac3H11_4492

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 35 mM
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79,317 + Ac3H11_4490 0.25 +0.6
79,379 + Ac3H11_4490 0.30 -1.8
79,380 - Ac3H11_4490 0.30 -1.5
79,386 + Ac3H11_4490 0.30 -0.5
79,386 + Ac3H11_4490 0.30 +0.1
79,386 + Ac3H11_4490 0.30 -0.5
79,386 + Ac3H11_4490 0.30 -0.5
79,386 + Ac3H11_4490 0.30 -0.6
79,387 - Ac3H11_4490 0.30 +0.1
79,387 - Ac3H11_4490 0.30 +0.3
79,527 + Ac3H11_4490 0.41 +0.7
79,527 + Ac3H11_4490 0.41 -0.6
79,528 - Ac3H11_4490 0.41 +0.8
79,528 - Ac3H11_4490 0.41 +0.7
79,528 - Ac3H11_4490 0.41 +0.2
79,659 + Ac3H11_4490 0.51 -0.2
79,659 + Ac3H11_4490 0.51 +0.6
79,660 - Ac3H11_4490 0.51 -0.4
79,660 - Ac3H11_4490 0.51 +0.7
79,660 - Ac3H11_4490 0.51 -0.8
79,668 + Ac3H11_4490 0.52 -0.2
79,668 + Ac3H11_4490 0.52 -1.2
79,668 + Ac3H11_4490 0.52 +0.1
79,669 - Ac3H11_4490 0.52 +0.1
79,669 - Ac3H11_4490 0.52 -0.0
79,669 - Ac3H11_4490 0.52 -0.4
79,671 + Ac3H11_4490 0.52 -0.3
79,671 + Ac3H11_4490 0.52 -0.3
79,671 + Ac3H11_4490 0.52 -0.7
79,671 + Ac3H11_4490 0.52 -0.2
79,671 + Ac3H11_4490 0.52 -0.2
79,672 - Ac3H11_4490 0.52 -1.1
79,692 + Ac3H11_4490 0.54 -0.2
79,693 - Ac3H11_4490 0.54 +0.4
79,722 + Ac3H11_4490 0.56 +0.2
79,722 + Ac3H11_4490 0.56 -0.5
79,723 - Ac3H11_4490 0.56 -0.1
79,723 - Ac3H11_4490 0.56 -0.3
79,723 - Ac3H11_4490 0.56 +1.0
79,723 - Ac3H11_4490 0.56 +0.2
79,723 - Ac3H11_4490 0.56 -0.3
79,723 - Ac3H11_4490 0.56 -0.5
79,725 + Ac3H11_4490 0.56 -0.1
79,725 + Ac3H11_4490 0.56 -0.1
79,725 + Ac3H11_4490 0.56 -1.7
79,725 + Ac3H11_4490 0.56 +0.7
79,725 + Ac3H11_4490 0.56 +0.4
79,725 + Ac3H11_4490 0.56 -0.3
79,726 - Ac3H11_4490 0.56 -0.4
79,726 - Ac3H11_4490 0.56 -0.1
79,726 - Ac3H11_4490 0.56 -0.4
79,726 - Ac3H11_4490 0.56 -0.6
79,726 - Ac3H11_4490 0.56 -1.4
79,726 - Ac3H11_4490 0.56 -0.4
79,738 - Ac3H11_4490 0.57 -1.7
79,738 - Ac3H11_4490 0.57 +0.0
79,738 - Ac3H11_4490 0.57 -0.7
79,833 + Ac3H11_4490 0.65 -0.1
79,833 + Ac3H11_4490 0.65 -0.8
79,833 + Ac3H11_4490 0.65 -0.4
79,833 + Ac3H11_4490 0.65 +0.4
79,833 + Ac3H11_4490 0.65 -0.6
79,833 + Ac3H11_4490 0.65 -0.3
79,834 - Ac3H11_4490 0.65 -0.4
79,968 + Ac3H11_4490 0.75 +0.3
79,968 + Ac3H11_4490 0.75 +1.6
79,968 + Ac3H11_4490 0.75 +1.6
79,968 + Ac3H11_4490 0.75 +0.1
79,968 + Ac3H11_4490 0.75 -0.4
79,968 + Ac3H11_4490 0.75 +0.1
79,969 - Ac3H11_4490 0.75 -0.2
79,969 - Ac3H11_4490 0.75 -0.2
79,969 - Ac3H11_4490 0.75 -0.2
79,969 - Ac3H11_4490 0.75 -0.1
79,969 - Ac3H11_4490 0.75 +0.1
80,037 + Ac3H11_4490 0.81 -0.3
80,038 - Ac3H11_4490 0.81 +0.1
80,038 - Ac3H11_4490 0.81 +0.2
80,038 - Ac3H11_4490 0.81 -0.2
80,184 + +0.1
80,184 + -0.3
80,184 + -0.1
80,184 + +0.1
80,185 - -0.7
80,185 - -0.1
80,185 - +0.5
80,185 - -0.0
80,185 - -0.9
80,218 - -0.0
80,218 - +0.2
80,511 + Ac3H11_4491 0.14 -0.9
80,511 + Ac3H11_4491 0.14 -0.1
80,511 + Ac3H11_4491 0.14 -1.0
80,512 - Ac3H11_4491 0.14 -1.4
80,581 - Ac3H11_4491 0.19 +0.2
80,581 - Ac3H11_4491 0.19 -1.0
81,022 - Ac3H11_4491 0.50 -0.1
81,102 + Ac3H11_4491 0.56 +0.3
81,132 + Ac3H11_4491 0.58 -0.1
81,133 - Ac3H11_4491 0.58 -0.7
81,192 + Ac3H11_4491 0.63 -1.0
81,193 - Ac3H11_4491 0.63 -0.2
81,193 - Ac3H11_4491 0.63 -0.5
81,564 + Ac3H11_4491 0.89 -0.8
81,564 + Ac3H11_4491 0.89 -1.0
81,591 + +0.5
81,591 + -0.4
81,592 - +0.9
81,654 + +1.3
81,655 - -0.4
81,655 - +1.2
81,655 - -1.0
81,675 - +0.5
81,675 - -0.4
81,675 - -0.6
81,675 - +1.9
81,685 - -1.0
81,687 + +0.3
81,688 - +0.4
81,688 - +0.9
81,793 + -0.2
81,793 + -0.4
81,793 + -0.5
81,793 + +0.2
81,794 - -0.3
81,952 + +0.3
81,953 - -0.1
81,953 - +0.9
81,953 - -0.5
82,061 - -0.2
82,070 - -0.9
82,070 - -0.2
82,075 + +0.1
82,075 + -1.7
82,075 + -0.0
82,075 + -1.6
82,076 - +0.3
82,096 + +0.2
82,096 + +0.1
82,291 + Ac3H11_4492 0.14 -1.5
82,292 - Ac3H11_4492 0.14 +0.5
82,292 - Ac3H11_4492 0.14 +0.7
82,363 + Ac3H11_4492 0.16 -0.7
82,363 + Ac3H11_4492 0.16 -0.7
82,381 + Ac3H11_4492 0.16 -0.4
82,382 - Ac3H11_4492 0.16 -0.9
82,417 + Ac3H11_4492 0.17 -0.6
82,417 + Ac3H11_4492 0.17 -1.5
82,417 + Ac3H11_4492 0.17 -0.9
82,417 + Ac3H11_4492 0.17 +0.1
82,417 + Ac3H11_4492 0.17 -0.7
82,417 + Ac3H11_4492 0.17 -0.1
82,417 + Ac3H11_4492 0.17 +0.8
82,417 + Ac3H11_4492 0.17 +0.1
82,418 - Ac3H11_4492 0.17 -1.4
82,418 - Ac3H11_4492 0.17 +0.1
82,418 - Ac3H11_4492 0.17 +0.1
82,418 - Ac3H11_4492 0.17 -0.0
82,426 + Ac3H11_4492 0.17 -0.5
82,426 + Ac3H11_4492 0.17 +1.0
82,498 + Ac3H11_4492 0.19 -1.0
82,499 - Ac3H11_4492 0.19 +0.7
82,499 - Ac3H11_4492 0.19 -0.2
82,499 - Ac3H11_4492 0.19 +0.0
82,510 + Ac3H11_4492 0.20 -0.8
82,510 + Ac3H11_4492 0.20 -2.3
82,510 + Ac3H11_4492 0.20 -1.0
82,510 + Ac3H11_4492 0.20 -0.9
82,510 + Ac3H11_4492 0.20 -0.0
82,511 - Ac3H11_4492 0.20 +0.1
82,511 - Ac3H11_4492 0.20 -0.0
82,511 - Ac3H11_4492 0.20 -0.3
82,511 - Ac3H11_4492 0.20 -0.8
82,511 - Ac3H11_4492 0.20 +0.7
82,511 - Ac3H11_4492 0.20 -0.6
82,511 - Ac3H11_4492 0.20 +1.4
82,511 - Ac3H11_4492 0.20 +1.4
82,582 + Ac3H11_4492 0.21 -0.2
82,582 + Ac3H11_4492 0.21 -1.7
82,582 + Ac3H11_4492 0.21 -1.0
82,582 + Ac3H11_4492 0.21 -0.5
82,583 - Ac3H11_4492 0.21 -0.5
82,583 - Ac3H11_4492 0.21 -0.1

Or see this region's nucleotide sequence