Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4271

Experiment: sodium fluoride 35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4270 and Ac3H11_4271 are separated by 2 nucleotidesAc3H11_4271 and Ac3H11_4272 overlap by 4 nucleotidesAc3H11_4272 and Ac3H11_4273 are separated by 147 nucleotides Ac3H11_4270 - Arabinose 5-phosphate isomerase (EC 5.3.1.13), at 48,110 to 49,111 _4270 Ac3H11_4271 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45), at 49,114 to 49,683 _4271 Ac3H11_4272 - Probable transmembrane protein, at 49,680 to 50,297 _4272 Ac3H11_4273 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 50,445 to 51,221 _4273 Position (kb) 49 50Strain fitness (log2 ratio) -1 0 1at 49.240 kb on + strand, within Ac3H11_4271at 49.240 kb on + strand, within Ac3H11_4271at 49.240 kb on + strand, within Ac3H11_4271at 49.241 kb on - strand, within Ac3H11_4271at 49.241 kb on - strand, within Ac3H11_4271at 49.651 kb on + strandat 49.651 kb on + strandat 49.672 kb on + strandat 49.672 kb on + strandat 49.672 kb on + strandat 49.673 kb on - strandat 49.673 kb on - strandat 49.722 kb on + strandat 50.437 kb on + strandat 50.438 kb on - strandat 50.590 kb on + strand, within Ac3H11_4273

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 35 mM
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49,240 + Ac3H11_4271 0.22 -0.1
49,240 + Ac3H11_4271 0.22 +0.0
49,240 + Ac3H11_4271 0.22 +0.1
49,241 - Ac3H11_4271 0.22 +0.6
49,241 - Ac3H11_4271 0.22 +0.2
49,651 + +0.4
49,651 + +0.1
49,672 + -0.6
49,672 + +1.7
49,672 + -0.5
49,673 - +0.2
49,673 - -0.1
49,722 + -0.1
50,437 + -0.1
50,438 - +0.7
50,590 + Ac3H11_4273 0.19 -0.1

Or see this region's nucleotide sequence