Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4009

Experiment: sodium fluoride 35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4008 and Ac3H11_4009 are separated by 91 nucleotidesAc3H11_4009 and Ac3H11_4010 overlap by 11 nucleotidesAc3H11_4010 and Ac3H11_4011 are separated by 11 nucleotides Ac3H11_4008 - tRNA-i(6)A37 methylthiotransferase, at 244,619 to 245,965 _4008 Ac3H11_4009 - Putative sensor-like histidine kinase YfhK, at 246,057 to 247,436 _4009 Ac3H11_4010 - hypothetical protein, at 247,426 to 248,136 _4010 Ac3H11_4011 - Putative sensory histidine kinase YfhA, at 248,148 to 249,566 _4011 Position (kb) 246 247 248Strain fitness (log2 ratio) -3 -2 -1 0 1at 245.090 kb on + strand, within Ac3H11_4008at 245.090 kb on + strand, within Ac3H11_4008at 245.090 kb on + strand, within Ac3H11_4008at 245.090 kb on + strand, within Ac3H11_4008at 245.090 kb on + strand, within Ac3H11_4008at 245.090 kb on + strand, within Ac3H11_4008at 245.091 kb on - strand, within Ac3H11_4008at 245.099 kb on + strand, within Ac3H11_4008at 245.099 kb on + strand, within Ac3H11_4008at 245.099 kb on + strand, within Ac3H11_4008at 245.099 kb on + strand, within Ac3H11_4008at 245.099 kb on + strand, within Ac3H11_4008at 245.099 kb on + strand, within Ac3H11_4008at 245.100 kb on - strand, within Ac3H11_4008at 245.100 kb on - strand, within Ac3H11_4008at 245.100 kb on - strand, within Ac3H11_4008at 245.114 kb on + strand, within Ac3H11_4008at 245.115 kb on - strand, within Ac3H11_4008at 245.115 kb on - strand, within Ac3H11_4008at 245.115 kb on - strand, within Ac3H11_4008at 245.115 kb on - strand, within Ac3H11_4008at 245.228 kb on + strand, within Ac3H11_4008at 245.228 kb on + strand, within Ac3H11_4008at 245.229 kb on - strand, within Ac3H11_4008at 245.229 kb on - strand, within Ac3H11_4008at 245.229 kb on - strand, within Ac3H11_4008at 245.229 kb on - strand, within Ac3H11_4008at 245.229 kb on - strand, within Ac3H11_4008at 245.229 kb on - strand, within Ac3H11_4008at 245.285 kb on + strand, within Ac3H11_4008at 245.285 kb on + strand, within Ac3H11_4008at 245.285 kb on + strand, within Ac3H11_4008at 245.285 kb on + strand, within Ac3H11_4008at 245.285 kb on + strand, within Ac3H11_4008at 245.285 kb on + strand, within Ac3H11_4008at 245.285 kb on + strand, within Ac3H11_4008at 245.285 kb on + strand, within Ac3H11_4008at 245.286 kb on - strand, within Ac3H11_4008at 245.286 kb on - strand, within Ac3H11_4008at 245.286 kb on - strand, within Ac3H11_4008at 245.286 kb on - strand, within Ac3H11_4008at 245.286 kb on - strand, within Ac3H11_4008at 245.286 kb on - strand, within Ac3H11_4008at 245.286 kb on - strand, within Ac3H11_4008at 245.322 kb on - strand, within Ac3H11_4008at 245.322 kb on - strand, within Ac3H11_4008at 245.456 kb on + strand, within Ac3H11_4008at 245.456 kb on + strand, within Ac3H11_4008at 245.456 kb on + strand, within Ac3H11_4008at 245.457 kb on - strand, within Ac3H11_4008at 245.471 kb on + strand, within Ac3H11_4008at 245.471 kb on + strand, within Ac3H11_4008at 245.471 kb on + strand, within Ac3H11_4008at 245.471 kb on + strand, within Ac3H11_4008at 245.471 kb on + strand, within Ac3H11_4008at 245.471 kb on + strand, within Ac3H11_4008at 245.472 kb on - strand, within Ac3H11_4008at 245.472 kb on - strand, within Ac3H11_4008at 245.472 kb on - strand, within Ac3H11_4008at 245.472 kb on - strand, within Ac3H11_4008at 245.472 kb on - strand, within Ac3H11_4008at 245.912 kb on + strandat 245.912 kb on + strandat 245.913 kb on - strandat 245.913 kb on - strandat 245.913 kb on - strandat 245.913 kb on - strandat 245.913 kb on - strandat 245.913 kb on - strandat 245.913 kb on - strandat 245.913 kb on - strandat 245.913 kb on - strandat 246.350 kb on + strand, within Ac3H11_4009at 246.769 kb on + strand, within Ac3H11_4009at 246.769 kb on + strand, within Ac3H11_4009at 246.769 kb on + strand, within Ac3H11_4009at 246.769 kb on + strand, within Ac3H11_4009at 246.769 kb on + strand, within Ac3H11_4009at 246.770 kb on - strand, within Ac3H11_4009at 246.877 kb on + strand, within Ac3H11_4009at 246.877 kb on + strand, within Ac3H11_4009at 246.878 kb on - strand, within Ac3H11_4009at 247.341 kb on + strandat 247.341 kb on + strandat 247.341 kb on + strandat 247.341 kb on + strandat 247.341 kb on + strandat 247.341 kb on + strandat 247.341 kb on + strandat 247.341 kb on + strandat 247.341 kb on + strandat 247.342 kb on - strandat 247.342 kb on - strandat 247.342 kb on - strandat 247.342 kb on - strandat 247.342 kb on - strandat 247.342 kb on - strandat 247.342 kb on - strandat 247.342 kb on - strandat 247.342 kb on - strandat 247.342 kb on - strandat 247.342 kb on - strandat 247.417 kb on - strandat 247.486 kb on + strandat 247.486 kb on + strandat 247.486 kb on + strandat 247.487 kb on - strandat 247.693 kb on + strand, within Ac3H11_4010at 247.693 kb on + strand, within Ac3H11_4010at 247.693 kb on + strand, within Ac3H11_4010at 247.694 kb on - strand, within Ac3H11_4010at 247.853 kb on + strand, within Ac3H11_4010at 247.853 kb on + strand, within Ac3H11_4010at 247.853 kb on + strand, within Ac3H11_4010at 247.854 kb on - strand, within Ac3H11_4010at 248.386 kb on + strand, within Ac3H11_4011at 248.386 kb on + strand, within Ac3H11_4011at 248.386 kb on + strand, within Ac3H11_4011at 248.386 kb on + strand, within Ac3H11_4011at 248.386 kb on + strand, within Ac3H11_4011at 248.386 kb on + strand, within Ac3H11_4011at 248.387 kb on - strand, within Ac3H11_4011at 248.387 kb on - strand, within Ac3H11_4011at 248.387 kb on - strand, within Ac3H11_4011at 248.387 kb on - strand, within Ac3H11_4011at 248.387 kb on - strand, within Ac3H11_4011

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 35 mM
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245,090 + Ac3H11_4008 0.35 -0.1
245,090 + Ac3H11_4008 0.35 +0.8
245,090 + Ac3H11_4008 0.35 -0.0
245,090 + Ac3H11_4008 0.35 +1.0
245,090 + Ac3H11_4008 0.35 +0.5
245,090 + Ac3H11_4008 0.35 +0.2
245,091 - Ac3H11_4008 0.35 +0.4
245,099 + Ac3H11_4008 0.36 +0.6
245,099 + Ac3H11_4008 0.36 -0.0
245,099 + Ac3H11_4008 0.36 +0.6
245,099 + Ac3H11_4008 0.36 +0.3
245,099 + Ac3H11_4008 0.36 -0.3
245,099 + Ac3H11_4008 0.36 -0.4
245,100 - Ac3H11_4008 0.36 -1.0
245,100 - Ac3H11_4008 0.36 +0.8
245,100 - Ac3H11_4008 0.36 +1.0
245,114 + Ac3H11_4008 0.37 +0.3
245,115 - Ac3H11_4008 0.37 +1.2
245,115 - Ac3H11_4008 0.37 -0.6
245,115 - Ac3H11_4008 0.37 -0.5
245,115 - Ac3H11_4008 0.37 +0.9
245,228 + Ac3H11_4008 0.45 -0.1
245,228 + Ac3H11_4008 0.45 +0.3
245,229 - Ac3H11_4008 0.45 +0.9
245,229 - Ac3H11_4008 0.45 -0.8
245,229 - Ac3H11_4008 0.45 +0.6
245,229 - Ac3H11_4008 0.45 +0.5
245,229 - Ac3H11_4008 0.45 +0.4
245,229 - Ac3H11_4008 0.45 -0.5
245,285 + Ac3H11_4008 0.49 +0.2
245,285 + Ac3H11_4008 0.49 -0.4
245,285 + Ac3H11_4008 0.49 +0.6
245,285 + Ac3H11_4008 0.49 +0.2
245,285 + Ac3H11_4008 0.49 -0.4
245,285 + Ac3H11_4008 0.49 +0.1
245,285 + Ac3H11_4008 0.49 -0.1
245,285 + Ac3H11_4008 0.49 +1.1
245,286 - Ac3H11_4008 0.50 +0.3
245,286 - Ac3H11_4008 0.50 +0.4
245,286 - Ac3H11_4008 0.50 +0.1
245,286 - Ac3H11_4008 0.50 +0.5
245,286 - Ac3H11_4008 0.50 -0.1
245,286 - Ac3H11_4008 0.50 +0.3
245,286 - Ac3H11_4008 0.50 +0.6
245,322 - Ac3H11_4008 0.52 -0.4
245,322 - Ac3H11_4008 0.52 +0.2
245,456 + Ac3H11_4008 0.62 +0.3
245,456 + Ac3H11_4008 0.62 -2.5
245,456 + Ac3H11_4008 0.62 +1.0
245,457 - Ac3H11_4008 0.62 +0.4
245,471 + Ac3H11_4008 0.63 +0.4
245,471 + Ac3H11_4008 0.63 -0.3
245,471 + Ac3H11_4008 0.63 -0.4
245,471 + Ac3H11_4008 0.63 +0.7
245,471 + Ac3H11_4008 0.63 -0.1
245,471 + Ac3H11_4008 0.63 +0.2
245,472 - Ac3H11_4008 0.63 +1.2
245,472 - Ac3H11_4008 0.63 +0.8
245,472 - Ac3H11_4008 0.63 +0.1
245,472 - Ac3H11_4008 0.63 +0.1
245,472 - Ac3H11_4008 0.63 +1.2
245,912 + +0.7
245,912 + +0.2
245,913 - +0.5
245,913 - +0.6
245,913 - +1.0
245,913 - +1.3
245,913 - -0.3
245,913 - +1.2
245,913 - +0.3
245,913 - +0.2
245,913 - +0.4
246,350 + Ac3H11_4009 0.21 +0.6
246,769 + Ac3H11_4009 0.52 +0.7
246,769 + Ac3H11_4009 0.52 -0.1
246,769 + Ac3H11_4009 0.52 -0.2
246,769 + Ac3H11_4009 0.52 +1.1
246,769 + Ac3H11_4009 0.52 +0.1
246,770 - Ac3H11_4009 0.52 -0.7
246,877 + Ac3H11_4009 0.59 +1.0
246,877 + Ac3H11_4009 0.59 +0.7
246,878 - Ac3H11_4009 0.59 +0.7
247,341 + -0.3
247,341 + -0.3
247,341 + +0.4
247,341 + +0.4
247,341 + +0.1
247,341 + -1.3
247,341 + -0.5
247,341 + +0.1
247,341 + +0.2
247,342 - +0.1
247,342 - +0.5
247,342 - +0.1
247,342 - -0.1
247,342 - +0.8
247,342 - +0.1
247,342 - -3.1
247,342 - -0.9
247,342 - -0.1
247,342 - -0.1
247,342 - -0.4
247,417 - -0.3
247,486 + +1.0
247,486 + -0.6
247,486 + +1.1
247,487 - +1.0
247,693 + Ac3H11_4010 0.38 +1.3
247,693 + Ac3H11_4010 0.38 -0.7
247,693 + Ac3H11_4010 0.38 -0.7
247,694 - Ac3H11_4010 0.38 +0.1
247,853 + Ac3H11_4010 0.60 +0.5
247,853 + Ac3H11_4010 0.60 +0.6
247,853 + Ac3H11_4010 0.60 +0.3
247,854 - Ac3H11_4010 0.60 +0.2
248,386 + Ac3H11_4011 0.17 -0.5
248,386 + Ac3H11_4011 0.17 +0.3
248,386 + Ac3H11_4011 0.17 -1.1
248,386 + Ac3H11_4011 0.17 -0.4
248,386 + Ac3H11_4011 0.17 -1.1
248,386 + Ac3H11_4011 0.17 +0.4
248,387 - Ac3H11_4011 0.17 +0.1
248,387 - Ac3H11_4011 0.17 +0.1
248,387 - Ac3H11_4011 0.17 -0.1
248,387 - Ac3H11_4011 0.17 +0.5
248,387 - Ac3H11_4011 0.17 -0.7

Or see this region's nucleotide sequence