Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3459

Experiment: sodium fluoride 35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3458 and Ac3H11_3459 are separated by 47 nucleotidesAc3H11_3459 and Ac3H11_3460 overlap by 1 nucleotides Ac3H11_3458 - A/G-specific adenine glycosylase (EC 3.2.2.-), at 9,099 to 10,172 _3458 Ac3H11_3459 - Hypothetical ATP-binding protein UPF0042, contains P-loop, at 10,220 to 11,083 _3459 Ac3H11_3460 - DNA repair protein RecN, at 11,083 to 12,753 _3460 Position (kb) 10 11 12Strain fitness (log2 ratio) -2 -1 0 1 2 3at 9.261 kb on + strand, within Ac3H11_3458at 9.261 kb on + strand, within Ac3H11_3458at 9.262 kb on - strand, within Ac3H11_3458at 9.262 kb on - strand, within Ac3H11_3458at 9.262 kb on - strand, within Ac3H11_3458at 9.264 kb on + strand, within Ac3H11_3458at 9.264 kb on + strand, within Ac3H11_3458at 9.264 kb on + strand, within Ac3H11_3458at 9.264 kb on + strand, within Ac3H11_3458at 9.264 kb on + strand, within Ac3H11_3458at 9.264 kb on + strand, within Ac3H11_3458at 9.264 kb on + strand, within Ac3H11_3458at 9.264 kb on + strand, within Ac3H11_3458at 9.265 kb on - strand, within Ac3H11_3458at 9.265 kb on - strand, within Ac3H11_3458at 9.265 kb on - strand, within Ac3H11_3458at 9.265 kb on - strand, within Ac3H11_3458at 9.265 kb on - strand, within Ac3H11_3458at 9.265 kb on - strand, within Ac3H11_3458at 9.265 kb on - strand, within Ac3H11_3458at 9.265 kb on - strand, within Ac3H11_3458at 9.265 kb on - strand, within Ac3H11_3458at 9.265 kb on - strand, within Ac3H11_3458at 9.265 kb on - strand, within Ac3H11_3458at 9.265 kb on - strand, within Ac3H11_3458at 9.265 kb on - strand, within Ac3H11_3458at 9.265 kb on - strand, within Ac3H11_3458at 9.265 kb on - strand, within Ac3H11_3458at 9.354 kb on + strand, within Ac3H11_3458at 9.354 kb on + strand, within Ac3H11_3458at 9.354 kb on + strand, within Ac3H11_3458at 9.355 kb on - strand, within Ac3H11_3458at 9.355 kb on - strand, within Ac3H11_3458at 9.355 kb on - strand, within Ac3H11_3458at 9.357 kb on + strand, within Ac3H11_3458at 9.357 kb on + strand, within Ac3H11_3458at 9.357 kb on + strand, within Ac3H11_3458at 9.358 kb on - strand, within Ac3H11_3458at 9.358 kb on - strand, within Ac3H11_3458at 9.358 kb on - strand, within Ac3H11_3458at 9.358 kb on - strand, within Ac3H11_3458at 9.358 kb on - strand, within Ac3H11_3458at 9.358 kb on - strand, within Ac3H11_3458at 9.660 kb on + strand, within Ac3H11_3458at 9.660 kb on + strand, within Ac3H11_3458at 9.661 kb on - strand, within Ac3H11_3458at 9.661 kb on - strand, within Ac3H11_3458at 9.699 kb on - strand, within Ac3H11_3458at 9.972 kb on + strand, within Ac3H11_3458at 9.972 kb on + strand, within Ac3H11_3458at 9.972 kb on + strand, within Ac3H11_3458at 9.972 kb on + strand, within Ac3H11_3458at 9.972 kb on + strand, within Ac3H11_3458at 9.973 kb on - strand, within Ac3H11_3458at 9.973 kb on - strand, within Ac3H11_3458at 9.973 kb on - strand, within Ac3H11_3458at 9.973 kb on - strand, within Ac3H11_3458at 9.973 kb on - strand, within Ac3H11_3458at 9.973 kb on - strand, within Ac3H11_3458at 9.973 kb on - strand, within Ac3H11_3458at 9.973 kb on - strand, within Ac3H11_3458at 9.973 kb on - strand, within Ac3H11_3458at 10.010 kb on + strand, within Ac3H11_3458at 10.010 kb on + strand, within Ac3H11_3458at 10.039 kb on + strand, within Ac3H11_3458at 10.039 kb on + strand, within Ac3H11_3458at 10.039 kb on + strand, within Ac3H11_3458at 10.040 kb on - strand, within Ac3H11_3458at 10.299 kb on + strandat 10.300 kb on - strandat 10.347 kb on + strand, within Ac3H11_3459at 10.347 kb on + strand, within Ac3H11_3459at 10.347 kb on + strand, within Ac3H11_3459at 10.347 kb on + strand, within Ac3H11_3459at 10.347 kb on + strand, within Ac3H11_3459at 10.347 kb on + strand, within Ac3H11_3459at 10.347 kb on + strand, within Ac3H11_3459at 10.347 kb on + strand, within Ac3H11_3459at 10.348 kb on - strand, within Ac3H11_3459at 10.348 kb on - strand, within Ac3H11_3459at 10.348 kb on - strand, within Ac3H11_3459at 10.348 kb on - strand, within Ac3H11_3459at 10.348 kb on - strand, within Ac3H11_3459at 10.348 kb on - strand, within Ac3H11_3459at 10.348 kb on - strand, within Ac3H11_3459at 10.348 kb on - strand, within Ac3H11_3459at 10.348 kb on - strand, within Ac3H11_3459at 10.400 kb on + strand, within Ac3H11_3459at 10.400 kb on + strand, within Ac3H11_3459at 10.401 kb on - strand, within Ac3H11_3459at 10.401 kb on - strand, within Ac3H11_3459at 10.401 kb on - strand, within Ac3H11_3459at 10.401 kb on - strand, within Ac3H11_3459at 10.401 kb on - strand, within Ac3H11_3459at 10.401 kb on - strand, within Ac3H11_3459at 10.401 kb on - strand, within Ac3H11_3459at 10.401 kb on - strand, within Ac3H11_3459at 10.495 kb on - strand, within Ac3H11_3459at 10.495 kb on - strand, within Ac3H11_3459at 10.530 kb on + strand, within Ac3H11_3459at 10.530 kb on + strand, within Ac3H11_3459at 10.530 kb on + strand, within Ac3H11_3459at 10.530 kb on + strand, within Ac3H11_3459at 10.530 kb on + strand, within Ac3H11_3459at 10.530 kb on + strand, within Ac3H11_3459at 10.530 kb on + strand, within Ac3H11_3459at 10.530 kb on + strand, within Ac3H11_3459at 10.530 kb on + strand, within Ac3H11_3459at 10.530 kb on + strand, within Ac3H11_3459at 10.530 kb on + strand, within Ac3H11_3459at 10.531 kb on - strand, within Ac3H11_3459at 10.531 kb on - strand, within Ac3H11_3459at 10.531 kb on - strand, within Ac3H11_3459at 10.531 kb on - strand, within Ac3H11_3459at 10.531 kb on - strand, within Ac3H11_3459at 10.531 kb on - strand, within Ac3H11_3459at 10.531 kb on - strand, within Ac3H11_3459at 10.531 kb on - strand, within Ac3H11_3459at 10.531 kb on - strand, within Ac3H11_3459at 10.531 kb on - strand, within Ac3H11_3459at 10.531 kb on - strand, within Ac3H11_3459at 10.531 kb on - strand, within Ac3H11_3459at 10.531 kb on - strand, within Ac3H11_3459at 10.577 kb on + strand, within Ac3H11_3459at 10.578 kb on - strand, within Ac3H11_3459at 10.578 kb on - strand, within Ac3H11_3459at 10.603 kb on + strand, within Ac3H11_3459at 10.603 kb on + strand, within Ac3H11_3459at 10.603 kb on + strand, within Ac3H11_3459at 10.603 kb on + strand, within Ac3H11_3459at 10.604 kb on - strand, within Ac3H11_3459at 10.623 kb on + strand, within Ac3H11_3459at 10.623 kb on + strand, within Ac3H11_3459at 10.624 kb on - strand, within Ac3H11_3459at 10.624 kb on - strand, within Ac3H11_3459at 10.991 kb on + strand, within Ac3H11_3459at 10.991 kb on + strand, within Ac3H11_3459at 10.991 kb on + strand, within Ac3H11_3459at 10.991 kb on + strand, within Ac3H11_3459at 10.992 kb on - strand, within Ac3H11_3459at 10.998 kb on + strandat 10.998 kb on + strandat 10.999 kb on - strandat 10.999 kb on - strandat 11.002 kb on - strandat 11.418 kb on + strand, within Ac3H11_3460at 11.418 kb on + strand, within Ac3H11_3460at 11.631 kb on + strand, within Ac3H11_3460at 11.644 kb on + strand, within Ac3H11_3460at 11.699 kb on + strand, within Ac3H11_3460at 11.699 kb on + strand, within Ac3H11_3460at 11.700 kb on - strand, within Ac3H11_3460at 11.700 kb on - strand, within Ac3H11_3460at 11.822 kb on + strand, within Ac3H11_3460at 11.822 kb on + strand, within Ac3H11_3460at 11.822 kb on + strand, within Ac3H11_3460at 11.822 kb on + strand, within Ac3H11_3460at 11.822 kb on + strand, within Ac3H11_3460at 11.823 kb on - strand, within Ac3H11_3460at 11.823 kb on - strand, within Ac3H11_3460at 11.823 kb on - strand, within Ac3H11_3460at 11.823 kb on - strand, within Ac3H11_3460at 11.906 kb on + strand, within Ac3H11_3460at 11.907 kb on - strand, within Ac3H11_3460at 11.907 kb on - strand, within Ac3H11_3460at 11.907 kb on - strand, within Ac3H11_3460at 11.926 kb on + strand, within Ac3H11_3460at 11.926 kb on + strand, within Ac3H11_3460at 11.926 kb on + strand, within Ac3H11_3460at 11.926 kb on + strand, within Ac3H11_3460at 11.926 kb on + strand, within Ac3H11_3460at 11.926 kb on + strand, within Ac3H11_3460at 11.926 kb on + strand, within Ac3H11_3460at 11.926 kb on + strand, within Ac3H11_3460at 11.927 kb on - strand, within Ac3H11_3460at 11.927 kb on - strand, within Ac3H11_3460at 11.927 kb on - strand, within Ac3H11_3460at 11.927 kb on - strand, within Ac3H11_3460at 11.959 kb on + strand, within Ac3H11_3460at 12.007 kb on + strand, within Ac3H11_3460at 12.007 kb on + strand, within Ac3H11_3460at 12.007 kb on + strand, within Ac3H11_3460at 12.008 kb on - strand, within Ac3H11_3460at 12.008 kb on - strand, within Ac3H11_3460at 12.008 kb on - strand, within Ac3H11_3460at 12.008 kb on - strand, within Ac3H11_3460

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 35 mM
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9,261 + Ac3H11_3458 0.15 +0.5
9,261 + Ac3H11_3458 0.15 -0.3
9,262 - Ac3H11_3458 0.15 +0.7
9,262 - Ac3H11_3458 0.15 +0.1
9,262 - Ac3H11_3458 0.15 +0.1
9,264 + Ac3H11_3458 0.15 +0.4
9,264 + Ac3H11_3458 0.15 -0.3
9,264 + Ac3H11_3458 0.15 +1.5
9,264 + Ac3H11_3458 0.15 +1.2
9,264 + Ac3H11_3458 0.15 -2.6
9,264 + Ac3H11_3458 0.15 -0.6
9,264 + Ac3H11_3458 0.15 -0.1
9,264 + Ac3H11_3458 0.15 -0.4
9,265 - Ac3H11_3458 0.15 -0.6
9,265 - Ac3H11_3458 0.15 +0.3
9,265 - Ac3H11_3458 0.15 +0.1
9,265 - Ac3H11_3458 0.15 -0.9
9,265 - Ac3H11_3458 0.15 +0.4
9,265 - Ac3H11_3458 0.15 -0.0
9,265 - Ac3H11_3458 0.15 -0.6
9,265 - Ac3H11_3458 0.15 -0.3
9,265 - Ac3H11_3458 0.15 +0.9
9,265 - Ac3H11_3458 0.15 +0.0
9,265 - Ac3H11_3458 0.15 +0.3
9,265 - Ac3H11_3458 0.15 +0.7
9,265 - Ac3H11_3458 0.15 -1.1
9,265 - Ac3H11_3458 0.15 -0.1
9,265 - Ac3H11_3458 0.15 +0.9
9,354 + Ac3H11_3458 0.24 -0.1
9,354 + Ac3H11_3458 0.24 -0.5
9,354 + Ac3H11_3458 0.24 +0.4
9,355 - Ac3H11_3458 0.24 +0.2
9,355 - Ac3H11_3458 0.24 -0.2
9,355 - Ac3H11_3458 0.24 -0.0
9,357 + Ac3H11_3458 0.24 -0.5
9,357 + Ac3H11_3458 0.24 +0.7
9,357 + Ac3H11_3458 0.24 +0.7
9,358 - Ac3H11_3458 0.24 +0.0
9,358 - Ac3H11_3458 0.24 -0.6
9,358 - Ac3H11_3458 0.24 +0.9
9,358 - Ac3H11_3458 0.24 -0.3
9,358 - Ac3H11_3458 0.24 +0.8
9,358 - Ac3H11_3458 0.24 +0.2
9,660 + Ac3H11_3458 0.52 +0.6
9,660 + Ac3H11_3458 0.52 +1.9
9,661 - Ac3H11_3458 0.52 +0.2
9,661 - Ac3H11_3458 0.52 -0.8
9,699 - Ac3H11_3458 0.56 +1.0
9,972 + Ac3H11_3458 0.81 -0.4
9,972 + Ac3H11_3458 0.81 -0.5
9,972 + Ac3H11_3458 0.81 +0.6
9,972 + Ac3H11_3458 0.81 +0.0
9,972 + Ac3H11_3458 0.81 +0.8
9,973 - Ac3H11_3458 0.81 -0.6
9,973 - Ac3H11_3458 0.81 +0.2
9,973 - Ac3H11_3458 0.81 +0.6
9,973 - Ac3H11_3458 0.81 +0.2
9,973 - Ac3H11_3458 0.81 -1.6
9,973 - Ac3H11_3458 0.81 -0.4
9,973 - Ac3H11_3458 0.81 -0.7
9,973 - Ac3H11_3458 0.81 -0.3
9,973 - Ac3H11_3458 0.81 -0.1
10,010 + Ac3H11_3458 0.85 -0.4
10,010 + Ac3H11_3458 0.85 -1.2
10,039 + Ac3H11_3458 0.88 -0.2
10,039 + Ac3H11_3458 0.88 +0.2
10,039 + Ac3H11_3458 0.88 +0.4
10,040 - Ac3H11_3458 0.88 +1.0
10,299 + +0.9
10,300 - +1.1
10,347 + Ac3H11_3459 0.15 +1.5
10,347 + Ac3H11_3459 0.15 +0.1
10,347 + Ac3H11_3459 0.15 +1.6
10,347 + Ac3H11_3459 0.15 -0.3
10,347 + Ac3H11_3459 0.15 +0.5
10,347 + Ac3H11_3459 0.15 -0.7
10,347 + Ac3H11_3459 0.15 +0.6
10,347 + Ac3H11_3459 0.15 +0.9
10,348 - Ac3H11_3459 0.15 +0.8
10,348 - Ac3H11_3459 0.15 +0.1
10,348 - Ac3H11_3459 0.15 -0.8
10,348 - Ac3H11_3459 0.15 +0.7
10,348 - Ac3H11_3459 0.15 +0.3
10,348 - Ac3H11_3459 0.15 -0.4
10,348 - Ac3H11_3459 0.15 +0.6
10,348 - Ac3H11_3459 0.15 +1.1
10,348 - Ac3H11_3459 0.15 +0.0
10,400 + Ac3H11_3459 0.21 +0.7
10,400 + Ac3H11_3459 0.21 +0.3
10,401 - Ac3H11_3459 0.21 +0.3
10,401 - Ac3H11_3459 0.21 -0.4
10,401 - Ac3H11_3459 0.21 -0.3
10,401 - Ac3H11_3459 0.21 +0.8
10,401 - Ac3H11_3459 0.21 -0.8
10,401 - Ac3H11_3459 0.21 -0.3
10,401 - Ac3H11_3459 0.21 +1.5
10,401 - Ac3H11_3459 0.21 +0.9
10,495 - Ac3H11_3459 0.32 +1.2
10,495 - Ac3H11_3459 0.32 +0.6
10,530 + Ac3H11_3459 0.36 -0.5
10,530 + Ac3H11_3459 0.36 -0.6
10,530 + Ac3H11_3459 0.36 -1.0
10,530 + Ac3H11_3459 0.36 +0.4
10,530 + Ac3H11_3459 0.36 +1.0
10,530 + Ac3H11_3459 0.36 +1.2
10,530 + Ac3H11_3459 0.36 +0.7
10,530 + Ac3H11_3459 0.36 +0.3
10,530 + Ac3H11_3459 0.36 +0.6
10,530 + Ac3H11_3459 0.36 -0.6
10,530 + Ac3H11_3459 0.36 +1.2
10,531 - Ac3H11_3459 0.36 +0.8
10,531 - Ac3H11_3459 0.36 +0.5
10,531 - Ac3H11_3459 0.36 -0.2
10,531 - Ac3H11_3459 0.36 +0.2
10,531 - Ac3H11_3459 0.36 -0.0
10,531 - Ac3H11_3459 0.36 +0.8
10,531 - Ac3H11_3459 0.36 +2.3
10,531 - Ac3H11_3459 0.36 -0.3
10,531 - Ac3H11_3459 0.36 +1.2
10,531 - Ac3H11_3459 0.36 +2.8
10,531 - Ac3H11_3459 0.36 -0.4
10,531 - Ac3H11_3459 0.36 +1.5
10,531 - Ac3H11_3459 0.36 -0.6
10,577 + Ac3H11_3459 0.41 +0.9
10,578 - Ac3H11_3459 0.41 +0.0
10,578 - Ac3H11_3459 0.41 -1.1
10,603 + Ac3H11_3459 0.44 +1.7
10,603 + Ac3H11_3459 0.44 +0.5
10,603 + Ac3H11_3459 0.44 +0.4
10,603 + Ac3H11_3459 0.44 +0.7
10,604 - Ac3H11_3459 0.44 +0.2
10,623 + Ac3H11_3459 0.47 -0.9
10,623 + Ac3H11_3459 0.47 -1.5
10,624 - Ac3H11_3459 0.47 +2.0
10,624 - Ac3H11_3459 0.47 -0.3
10,991 + Ac3H11_3459 0.89 +0.2
10,991 + Ac3H11_3459 0.89 +1.6
10,991 + Ac3H11_3459 0.89 +0.5
10,991 + Ac3H11_3459 0.89 +0.2
10,992 - Ac3H11_3459 0.89 +0.5
10,998 + +1.1
10,998 + -0.1
10,999 - +1.0
10,999 - +1.5
11,002 - -0.8
11,418 + Ac3H11_3460 0.20 -0.4
11,418 + Ac3H11_3460 0.20 +0.4
11,631 + Ac3H11_3460 0.33 +0.1
11,644 + Ac3H11_3460 0.34 -0.3
11,699 + Ac3H11_3460 0.37 +0.7
11,699 + Ac3H11_3460 0.37 +0.1
11,700 - Ac3H11_3460 0.37 +0.2
11,700 - Ac3H11_3460 0.37 -0.0
11,822 + Ac3H11_3460 0.44 -0.1
11,822 + Ac3H11_3460 0.44 +0.2
11,822 + Ac3H11_3460 0.44 +0.4
11,822 + Ac3H11_3460 0.44 +0.4
11,822 + Ac3H11_3460 0.44 +1.1
11,823 - Ac3H11_3460 0.44 +0.6
11,823 - Ac3H11_3460 0.44 -0.1
11,823 - Ac3H11_3460 0.44 -1.9
11,823 - Ac3H11_3460 0.44 -0.4
11,906 + Ac3H11_3460 0.49 -0.9
11,907 - Ac3H11_3460 0.49 -0.6
11,907 - Ac3H11_3460 0.49 +0.2
11,907 - Ac3H11_3460 0.49 -0.5
11,926 + Ac3H11_3460 0.50 +0.3
11,926 + Ac3H11_3460 0.50 +0.6
11,926 + Ac3H11_3460 0.50 +0.3
11,926 + Ac3H11_3460 0.50 -1.0
11,926 + Ac3H11_3460 0.50 +1.2
11,926 + Ac3H11_3460 0.50 +0.5
11,926 + Ac3H11_3460 0.50 +0.9
11,926 + Ac3H11_3460 0.50 +1.0
11,927 - Ac3H11_3460 0.51 +1.0
11,927 - Ac3H11_3460 0.51 -0.1
11,927 - Ac3H11_3460 0.51 -0.4
11,927 - Ac3H11_3460 0.51 +0.5
11,959 + Ac3H11_3460 0.52 +1.0
12,007 + Ac3H11_3460 0.55 -0.1
12,007 + Ac3H11_3460 0.55 -0.3
12,007 + Ac3H11_3460 0.55 -0.0
12,008 - Ac3H11_3460 0.55 -0.9
12,008 - Ac3H11_3460 0.55 -1.3
12,008 - Ac3H11_3460 0.55 -0.2
12,008 - Ac3H11_3460 0.55 -0.0

Or see this region's nucleotide sequence