Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3365

Experiment: sodium fluoride 35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3364 and Ac3H11_3365 are separated by 84 nucleotidesAc3H11_3365 and Ac3H11_3366 are separated by 15 nucleotides Ac3H11_3364 - Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), at 47,714 to 48,811 _3364 Ac3H11_3365 - Glycosyl transferase, group 1, at 48,896 to 49,870 _3365 Ac3H11_3366 - O-antigen ligase, at 49,886 to 51,139 _3366 Position (kb) 48 49 50Strain fitness (log2 ratio) -1 0 1 2at 47.996 kb on + strand, within Ac3H11_3364at 47.996 kb on + strand, within Ac3H11_3364at 48.971 kb on + strandat 48.972 kb on - strandat 48.981 kb on + strandat 48.981 kb on + strandat 48.981 kb on + strandat 48.981 kb on + strandat 48.981 kb on + strandat 48.981 kb on + strandat 48.981 kb on + strandat 48.981 kb on + strandat 48.981 kb on + strandat 48.981 kb on + strandat 48.981 kb on + strandat 48.981 kb on + strandat 48.982 kb on - strandat 48.982 kb on - strandat 48.982 kb on - strandat 48.982 kb on - strandat 48.982 kb on - strandat 48.982 kb on - strandat 48.982 kb on - strandat 48.982 kb on - strandat 48.982 kb on - strandat 48.982 kb on - strandat 48.982 kb on - strandat 48.982 kb on - strandat 48.993 kb on + strandat 48.993 kb on + strandat 48.993 kb on + strandat 48.993 kb on + strandat 48.994 kb on - strand, within Ac3H11_3365at 48.994 kb on - strand, within Ac3H11_3365at 48.994 kb on - strand, within Ac3H11_3365at 48.994 kb on - strand, within Ac3H11_3365at 49.069 kb on + strand, within Ac3H11_3365at 49.069 kb on + strand, within Ac3H11_3365at 49.070 kb on - strand, within Ac3H11_3365at 49.070 kb on - strand, within Ac3H11_3365at 49.070 kb on - strand, within Ac3H11_3365at 49.070 kb on - strand, within Ac3H11_3365at 49.150 kb on - strand, within Ac3H11_3365at 49.179 kb on + strand, within Ac3H11_3365at 49.179 kb on + strand, within Ac3H11_3365at 49.179 kb on + strand, within Ac3H11_3365at 49.179 kb on + strand, within Ac3H11_3365at 49.179 kb on + strand, within Ac3H11_3365at 49.179 kb on + strand, within Ac3H11_3365at 49.180 kb on - strand, within Ac3H11_3365at 49.180 kb on - strand, within Ac3H11_3365at 49.180 kb on - strand, within Ac3H11_3365at 49.180 kb on - strand, within Ac3H11_3365at 49.180 kb on - strand, within Ac3H11_3365at 49.447 kb on - strand, within Ac3H11_3365at 49.506 kb on + strand, within Ac3H11_3365at 49.506 kb on + strand, within Ac3H11_3365at 49.506 kb on + strand, within Ac3H11_3365at 49.507 kb on - strand, within Ac3H11_3365at 49.527 kb on + strand, within Ac3H11_3365at 49.614 kb on + strand, within Ac3H11_3365at 49.614 kb on + strand, within Ac3H11_3365at 49.615 kb on - strand, within Ac3H11_3365at 49.755 kb on + strand, within Ac3H11_3365at 49.755 kb on + strand, within Ac3H11_3365at 49.755 kb on + strand, within Ac3H11_3365at 49.755 kb on + strand, within Ac3H11_3365at 49.755 kb on + strand, within Ac3H11_3365at 49.756 kb on - strand, within Ac3H11_3365at 49.756 kb on - strand, within Ac3H11_3365at 49.756 kb on - strand, within Ac3H11_3365at 49.756 kb on - strand, within Ac3H11_3365at 49.756 kb on - strand, within Ac3H11_3365at 49.756 kb on - strand, within Ac3H11_3365at 49.825 kb on - strandat 49.825 kb on - strandat 49.830 kb on + strandat 49.830 kb on + strandat 49.831 kb on - strandat 49.831 kb on - strandat 49.831 kb on - strandat 49.877 kb on + strandat 49.877 kb on + strandat 49.877 kb on + strandat 49.877 kb on + strandat 49.877 kb on + strandat 49.877 kb on + strandat 49.878 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 35 mM
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47,996 + Ac3H11_3364 0.26 -0.8
47,996 + Ac3H11_3364 0.26 -0.2
48,971 + +1.3
48,972 - +1.1
48,981 + +1.1
48,981 + +0.6
48,981 + +1.1
48,981 + +1.0
48,981 + +1.0
48,981 + +0.7
48,981 + +0.9
48,981 + +1.3
48,981 + +1.2
48,981 + +1.0
48,981 + +1.0
48,981 + +0.9
48,982 - +1.1
48,982 - +1.1
48,982 - +0.5
48,982 - +0.8
48,982 - +1.2
48,982 - +0.8
48,982 - +0.9
48,982 - +0.9
48,982 - +0.8
48,982 - +0.8
48,982 - +1.3
48,982 - +1.0
48,993 + +0.9
48,993 + +0.4
48,993 + +1.3
48,993 + +1.0
48,994 - Ac3H11_3365 0.10 +1.0
48,994 - Ac3H11_3365 0.10 +1.2
48,994 - Ac3H11_3365 0.10 +0.9
48,994 - Ac3H11_3365 0.10 +1.3
49,069 + Ac3H11_3365 0.18 +0.6
49,069 + Ac3H11_3365 0.18 +0.9
49,070 - Ac3H11_3365 0.18 +1.0
49,070 - Ac3H11_3365 0.18 +0.9
49,070 - Ac3H11_3365 0.18 +0.6
49,070 - Ac3H11_3365 0.18 +0.6
49,150 - Ac3H11_3365 0.26 +1.1
49,179 + Ac3H11_3365 0.29 +1.4
49,179 + Ac3H11_3365 0.29 +0.7
49,179 + Ac3H11_3365 0.29 +0.5
49,179 + Ac3H11_3365 0.29 +0.2
49,179 + Ac3H11_3365 0.29 +0.7
49,179 + Ac3H11_3365 0.29 +1.2
49,180 - Ac3H11_3365 0.29 +0.7
49,180 - Ac3H11_3365 0.29 +0.5
49,180 - Ac3H11_3365 0.29 +1.1
49,180 - Ac3H11_3365 0.29 +1.1
49,180 - Ac3H11_3365 0.29 +1.0
49,447 - Ac3H11_3365 0.57 +1.1
49,506 + Ac3H11_3365 0.63 +1.1
49,506 + Ac3H11_3365 0.63 +0.8
49,506 + Ac3H11_3365 0.63 +1.1
49,507 - Ac3H11_3365 0.63 +1.1
49,527 + Ac3H11_3365 0.65 +1.1
49,614 + Ac3H11_3365 0.74 +0.9
49,614 + Ac3H11_3365 0.74 +1.0
49,615 - Ac3H11_3365 0.74 +0.8
49,755 + Ac3H11_3365 0.88 +1.2
49,755 + Ac3H11_3365 0.88 +0.9
49,755 + Ac3H11_3365 0.88 +1.8
49,755 + Ac3H11_3365 0.88 +0.7
49,755 + Ac3H11_3365 0.88 +1.3
49,756 - Ac3H11_3365 0.88 +1.4
49,756 - Ac3H11_3365 0.88 +0.8
49,756 - Ac3H11_3365 0.88 +1.1
49,756 - Ac3H11_3365 0.88 +0.0
49,756 - Ac3H11_3365 0.88 +0.4
49,756 - Ac3H11_3365 0.88 +0.9
49,825 - +1.1
49,825 - +1.1
49,830 + +0.9
49,830 + +0.6
49,831 - +0.8
49,831 - +0.4
49,831 - +0.6
49,877 + +0.2
49,877 + +0.6
49,877 + +0.5
49,877 + +0.6
49,877 + +1.1
49,877 + +0.3
49,878 - +0.1

Or see this region's nucleotide sequence