Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3294

Experiment: sodium fluoride 35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3293 and Ac3H11_3294 are separated by 175 nucleotidesAc3H11_3294 and Ac3H11_3295 are separated by 25 nucleotides Ac3H11_3293 - Argininosuccinate lyase (EC 4.3.2.1), at 25,988 to 27,628 _3293 Ac3H11_3294 - Chromosome initiation inhibitor, at 27,804 to 28,748 _3294 Ac3H11_3295 - Probable protease (EC 3.4.24.3), at 28,774 to 30,213 _3295 Position (kb) 27 28 29Strain fitness (log2 ratio) -2 -1 0 1 2at 26.805 kb on + strand, within Ac3H11_3293at 26.805 kb on + strand, within Ac3H11_3293at 26.805 kb on + strand, within Ac3H11_3293at 26.805 kb on + strand, within Ac3H11_3293at 26.805 kb on + strand, within Ac3H11_3293at 26.805 kb on + strand, within Ac3H11_3293at 26.805 kb on + strand, within Ac3H11_3293at 26.805 kb on + strand, within Ac3H11_3293at 26.806 kb on - strand, within Ac3H11_3293at 26.806 kb on - strand, within Ac3H11_3293at 26.806 kb on - strandat 26.806 kb on - strand, within Ac3H11_3293at 26.806 kb on - strand, within Ac3H11_3293at 26.806 kb on - strand, within Ac3H11_3293at 26.806 kb on - strand, within Ac3H11_3293at 26.806 kb on - strand, within Ac3H11_3293at 26.806 kb on - strand, within Ac3H11_3293at 26.806 kb on - strand, within Ac3H11_3293at 26.806 kb on - strand, within Ac3H11_3293at 26.813 kb on + strand, within Ac3H11_3293at 26.813 kb on + strand, within Ac3H11_3293at 26.813 kb on + strand, within Ac3H11_3293at 26.813 kb on + strand, within Ac3H11_3293at 26.813 kb on + strand, within Ac3H11_3293at 26.813 kb on + strand, within Ac3H11_3293at 26.813 kb on + strand, within Ac3H11_3293at 26.814 kb on - strand, within Ac3H11_3293at 26.814 kb on - strand, within Ac3H11_3293at 26.814 kb on - strand, within Ac3H11_3293at 26.814 kb on - strand, within Ac3H11_3293at 26.946 kb on + strand, within Ac3H11_3293at 26.946 kb on + strand, within Ac3H11_3293at 26.947 kb on - strand, within Ac3H11_3293at 26.947 kb on - strand, within Ac3H11_3293at 27.003 kb on + strand, within Ac3H11_3293at 27.012 kb on + strand, within Ac3H11_3293at 27.045 kb on + strand, within Ac3H11_3293at 27.046 kb on - strand, within Ac3H11_3293at 27.046 kb on - strand, within Ac3H11_3293at 27.057 kb on + strand, within Ac3H11_3293at 27.057 kb on + strand, within Ac3H11_3293at 27.057 kb on + strand, within Ac3H11_3293at 27.057 kb on + strand, within Ac3H11_3293at 27.057 kb on + strand, within Ac3H11_3293at 27.057 kb on + strand, within Ac3H11_3293at 27.057 kb on + strand, within Ac3H11_3293at 27.057 kb on + strand, within Ac3H11_3293at 27.057 kb on + strand, within Ac3H11_3293at 27.057 kb on + strand, within Ac3H11_3293at 27.057 kb on + strand, within Ac3H11_3293at 27.058 kb on - strand, within Ac3H11_3293at 27.058 kb on - strand, within Ac3H11_3293at 27.058 kb on - strand, within Ac3H11_3293at 27.058 kb on - strand, within Ac3H11_3293at 27.058 kb on - strand, within Ac3H11_3293at 27.058 kb on - strand, within Ac3H11_3293at 27.058 kb on - strand, within Ac3H11_3293at 27.058 kb on - strand, within Ac3H11_3293at 27.058 kb on - strand, within Ac3H11_3293at 27.058 kb on - strand, within Ac3H11_3293at 27.058 kb on - strand, within Ac3H11_3293at 27.399 kb on + strand, within Ac3H11_3293at 27.399 kb on + strand, within Ac3H11_3293at 27.400 kb on - strand, within Ac3H11_3293at 27.400 kb on - strand, within Ac3H11_3293at 27.400 kb on - strand, within Ac3H11_3293at 27.400 kb on - strand, within Ac3H11_3293at 27.400 kb on - strand, within Ac3H11_3293at 27.692 kb on - strandat 28.473 kb on - strand, within Ac3H11_3294at 28.542 kb on + strand, within Ac3H11_3294at 28.542 kb on + strand, within Ac3H11_3294at 28.542 kb on + strand, within Ac3H11_3294at 28.542 kb on + strand, within Ac3H11_3294at 28.542 kb on + strand, within Ac3H11_3294at 28.542 kb on + strand, within Ac3H11_3294at 28.542 kb on + strand, within Ac3H11_3294at 28.542 kb on + strand, within Ac3H11_3294at 28.543 kb on - strand, within Ac3H11_3294at 28.630 kb on + strand, within Ac3H11_3294at 28.630 kb on + strand, within Ac3H11_3294at 28.630 kb on + strand, within Ac3H11_3294at 28.631 kb on - strand, within Ac3H11_3294at 28.631 kb on - strand, within Ac3H11_3294at 28.851 kb on - strandat 28.959 kb on + strand, within Ac3H11_3295at 29.114 kb on + strand, within Ac3H11_3295at 29.114 kb on + strand, within Ac3H11_3295at 29.115 kb on - strand, within Ac3H11_3295at 29.115 kb on - strand, within Ac3H11_3295at 29.250 kb on - strand, within Ac3H11_3295at 29.273 kb on + strand, within Ac3H11_3295at 29.273 kb on + strand, within Ac3H11_3295at 29.273 kb on + strand, within Ac3H11_3295at 29.273 kb on + strand, within Ac3H11_3295at 29.273 kb on + strand, within Ac3H11_3295at 29.273 kb on + strand, within Ac3H11_3295at 29.274 kb on - strand, within Ac3H11_3295at 29.274 kb on - strand, within Ac3H11_3295at 29.274 kb on - strand, within Ac3H11_3295at 29.274 kb on - strand, within Ac3H11_3295at 29.274 kb on - strand, within Ac3H11_3295at 29.274 kb on - strand, within Ac3H11_3295at 29.274 kb on - strand, within Ac3H11_3295at 29.276 kb on + strand, within Ac3H11_3295at 29.276 kb on + strand, within Ac3H11_3295at 29.276 kb on + strand, within Ac3H11_3295at 29.276 kb on + strand, within Ac3H11_3295at 29.277 kb on - strand, within Ac3H11_3295at 29.277 kb on - strand, within Ac3H11_3295at 29.277 kb on - strand, within Ac3H11_3295at 29.277 kb on - strand, within Ac3H11_3295at 29.277 kb on - strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.444 kb on + strand, within Ac3H11_3295at 29.444 kb on + strand, within Ac3H11_3295at 29.444 kb on + strand, within Ac3H11_3295at 29.444 kb on + strand, within Ac3H11_3295at 29.444 kb on + strand, within Ac3H11_3295at 29.445 kb on - strand, within Ac3H11_3295at 29.603 kb on + strand, within Ac3H11_3295at 29.603 kb on + strand, within Ac3H11_3295at 29.604 kb on - strand, within Ac3H11_3295at 29.687 kb on + strand, within Ac3H11_3295at 29.688 kb on - strand, within Ac3H11_3295at 29.688 kb on - strand, within Ac3H11_3295

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 35 mM
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26,805 + Ac3H11_3293 0.50 -0.6
26,805 + Ac3H11_3293 0.50 -0.8
26,805 + Ac3H11_3293 0.50 +0.5
26,805 + Ac3H11_3293 0.50 +0.6
26,805 + Ac3H11_3293 0.50 -1.2
26,805 + Ac3H11_3293 0.50 -0.9
26,805 + Ac3H11_3293 0.50 +0.2
26,805 + Ac3H11_3293 0.50 +0.6
26,806 - Ac3H11_3293 0.50 +1.2
26,806 - Ac3H11_3293 0.50 +0.5
26,806 - +1.6
26,806 - Ac3H11_3293 0.50 -0.1
26,806 - Ac3H11_3293 0.50 +1.1
26,806 - Ac3H11_3293 0.50 +0.6
26,806 - Ac3H11_3293 0.50 +0.6
26,806 - Ac3H11_3293 0.50 +0.2
26,806 - Ac3H11_3293 0.50 +0.6
26,806 - Ac3H11_3293 0.50 -0.2
26,806 - Ac3H11_3293 0.50 +0.2
26,813 + Ac3H11_3293 0.50 -0.1
26,813 + Ac3H11_3293 0.50 -0.4
26,813 + Ac3H11_3293 0.50 -0.6
26,813 + Ac3H11_3293 0.50 +0.5
26,813 + Ac3H11_3293 0.50 -0.1
26,813 + Ac3H11_3293 0.50 -0.2
26,813 + Ac3H11_3293 0.50 +0.6
26,814 - Ac3H11_3293 0.50 -0.4
26,814 - Ac3H11_3293 0.50 +1.0
26,814 - Ac3H11_3293 0.50 -0.4
26,814 - Ac3H11_3293 0.50 -0.1
26,946 + Ac3H11_3293 0.58 -1.1
26,946 + Ac3H11_3293 0.58 +0.8
26,947 - Ac3H11_3293 0.58 +0.4
26,947 - Ac3H11_3293 0.58 +0.6
27,003 + Ac3H11_3293 0.62 +0.2
27,012 + Ac3H11_3293 0.62 -2.7
27,045 + Ac3H11_3293 0.64 +2.6
27,046 - Ac3H11_3293 0.64 +0.8
27,046 - Ac3H11_3293 0.64 +0.6
27,057 + Ac3H11_3293 0.65 -1.2
27,057 + Ac3H11_3293 0.65 +0.8
27,057 + Ac3H11_3293 0.65 +0.0
27,057 + Ac3H11_3293 0.65 +0.2
27,057 + Ac3H11_3293 0.65 -0.2
27,057 + Ac3H11_3293 0.65 +0.7
27,057 + Ac3H11_3293 0.65 +0.4
27,057 + Ac3H11_3293 0.65 +0.7
27,057 + Ac3H11_3293 0.65 -0.4
27,057 + Ac3H11_3293 0.65 -0.4
27,057 + Ac3H11_3293 0.65 +0.1
27,058 - Ac3H11_3293 0.65 -0.6
27,058 - Ac3H11_3293 0.65 +0.1
27,058 - Ac3H11_3293 0.65 +1.6
27,058 - Ac3H11_3293 0.65 -0.5
27,058 - Ac3H11_3293 0.65 +0.3
27,058 - Ac3H11_3293 0.65 -0.4
27,058 - Ac3H11_3293 0.65 -1.0
27,058 - Ac3H11_3293 0.65 +0.5
27,058 - Ac3H11_3293 0.65 +0.1
27,058 - Ac3H11_3293 0.65 +0.7
27,058 - Ac3H11_3293 0.65 -0.1
27,399 + Ac3H11_3293 0.86 +0.0
27,399 + Ac3H11_3293 0.86 +1.2
27,400 - Ac3H11_3293 0.86 +0.8
27,400 - Ac3H11_3293 0.86 +0.5
27,400 - Ac3H11_3293 0.86 -0.7
27,400 - Ac3H11_3293 0.86 -0.9
27,400 - Ac3H11_3293 0.86 +1.2
27,692 - +0.2
28,473 - Ac3H11_3294 0.71 +0.1
28,542 + Ac3H11_3294 0.78 +0.6
28,542 + Ac3H11_3294 0.78 +0.2
28,542 + Ac3H11_3294 0.78 -0.1
28,542 + Ac3H11_3294 0.78 +0.6
28,542 + Ac3H11_3294 0.78 +0.4
28,542 + Ac3H11_3294 0.78 +0.3
28,542 + Ac3H11_3294 0.78 -0.2
28,542 + Ac3H11_3294 0.78 +0.7
28,543 - Ac3H11_3294 0.78 +0.2
28,630 + Ac3H11_3294 0.87 +1.1
28,630 + Ac3H11_3294 0.87 +0.1
28,630 + Ac3H11_3294 0.87 +1.1
28,631 - Ac3H11_3294 0.88 +0.6
28,631 - Ac3H11_3294 0.88 +0.4
28,851 - +0.6
28,959 + Ac3H11_3295 0.13 -0.5
29,114 + Ac3H11_3295 0.24 -0.2
29,114 + Ac3H11_3295 0.24 +0.7
29,115 - Ac3H11_3295 0.24 -1.6
29,115 - Ac3H11_3295 0.24 +0.4
29,250 - Ac3H11_3295 0.33 -0.9
29,273 + Ac3H11_3295 0.35 -0.2
29,273 + Ac3H11_3295 0.35 +1.2
29,273 + Ac3H11_3295 0.35 +0.2
29,273 + Ac3H11_3295 0.35 +1.4
29,273 + Ac3H11_3295 0.35 -0.9
29,273 + Ac3H11_3295 0.35 +0.3
29,274 - Ac3H11_3295 0.35 +0.3
29,274 - Ac3H11_3295 0.35 +0.4
29,274 - Ac3H11_3295 0.35 +0.6
29,274 - Ac3H11_3295 0.35 +0.1
29,274 - Ac3H11_3295 0.35 +0.1
29,274 - Ac3H11_3295 0.35 -0.3
29,274 - Ac3H11_3295 0.35 -0.8
29,276 + Ac3H11_3295 0.35 +0.0
29,276 + Ac3H11_3295 0.35 +0.4
29,276 + Ac3H11_3295 0.35 +1.4
29,276 + Ac3H11_3295 0.35 +0.1
29,277 - Ac3H11_3295 0.35 -1.0
29,277 - Ac3H11_3295 0.35 -2.4
29,277 - Ac3H11_3295 0.35 -0.3
29,277 - Ac3H11_3295 0.35 +0.8
29,277 - Ac3H11_3295 0.35 +0.5
29,378 + Ac3H11_3295 0.42 +0.4
29,378 + Ac3H11_3295 0.42 -0.4
29,378 + Ac3H11_3295 0.42 +0.1
29,378 + Ac3H11_3295 0.42 +0.5
29,378 + Ac3H11_3295 0.42 +0.0
29,378 + Ac3H11_3295 0.42 +0.1
29,378 + Ac3H11_3295 0.42 +0.7
29,378 + Ac3H11_3295 0.42 -0.7
29,378 + Ac3H11_3295 0.42 +0.1
29,378 + Ac3H11_3295 0.42 -0.4
29,378 + Ac3H11_3295 0.42 -2.0
29,379 - Ac3H11_3295 0.42 -0.8
29,379 - Ac3H11_3295 0.42 -0.5
29,379 - Ac3H11_3295 0.42 -0.9
29,379 - Ac3H11_3295 0.42 +0.1
29,379 - Ac3H11_3295 0.42 -0.3
29,379 - Ac3H11_3295 0.42 -0.5
29,379 - Ac3H11_3295 0.42 +0.2
29,379 - Ac3H11_3295 0.42 +0.1
29,379 - Ac3H11_3295 0.42 +0.8
29,379 - Ac3H11_3295 0.42 +0.4
29,379 - Ac3H11_3295 0.42 -0.2
29,379 - Ac3H11_3295 0.42 +0.6
29,379 - Ac3H11_3295 0.42 +0.3
29,379 - Ac3H11_3295 0.42 +1.5
29,379 - Ac3H11_3295 0.42 +0.1
29,444 + Ac3H11_3295 0.47 -0.1
29,444 + Ac3H11_3295 0.47 +0.0
29,444 + Ac3H11_3295 0.47 +0.6
29,444 + Ac3H11_3295 0.47 -0.0
29,444 + Ac3H11_3295 0.47 +0.9
29,445 - Ac3H11_3295 0.47 +1.0
29,603 + Ac3H11_3295 0.58 +0.2
29,603 + Ac3H11_3295 0.58 +0.6
29,604 - Ac3H11_3295 0.58 -0.0
29,687 + Ac3H11_3295 0.63 -0.0
29,688 - Ac3H11_3295 0.63 +0.5
29,688 - Ac3H11_3295 0.63 -1.0

Or see this region's nucleotide sequence