Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2436

Experiment: sodium fluoride 35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2434 and Ac3H11_2435 are separated by 43 nucleotidesAc3H11_2435 and Ac3H11_2436 are separated by 270 nucleotidesAc3H11_2436 and Ac3H11_2437 are separated by 37 nucleotides Ac3H11_2434 - Transcriptional regulator, AraC family, at 693,681 to 694,355 _2434 Ac3H11_2435 - Lactoylglutathione lyase (EC 4.4.1.5), at 694,399 to 694,794 _2435 Ac3H11_2436 - hypothetical protein, at 695,065 to 695,463 _2436 Ac3H11_2437 - Cytosine deaminase (EC 3.5.4.1), at 695,501 to 696,769 _2437 Position (kb) 695 696Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 694.237 kb on - strand, within Ac3H11_2434at 694.344 kb on + strandat 694.466 kb on + strand, within Ac3H11_2435at 694.466 kb on + strand, within Ac3H11_2435at 694.466 kb on + strand, within Ac3H11_2435at 694.467 kb on - strand, within Ac3H11_2435at 694.467 kb on - strand, within Ac3H11_2435at 694.467 kb on - strand, within Ac3H11_2435at 694.467 kb on - strand, within Ac3H11_2435at 694.737 kb on - strand, within Ac3H11_2435at 694.769 kb on + strandat 694.770 kb on - strandat 694.770 kb on - strandat 694.877 kb on + strandat 694.877 kb on + strandat 694.878 kb on - strandat 694.941 kb on - strandat 694.954 kb on + strandat 694.955 kb on - strandat 694.955 kb on - strandat 694.982 kb on + strandat 694.983 kb on - strandat 695.078 kb on - strandat 695.078 kb on - strandat 695.078 kb on - strandat 695.078 kb on - strandat 695.170 kb on + strand, within Ac3H11_2436at 695.170 kb on + strand, within Ac3H11_2436at 695.171 kb on - strand, within Ac3H11_2436at 695.212 kb on + strand, within Ac3H11_2436at 695.696 kb on + strand, within Ac3H11_2437at 695.696 kb on + strand, within Ac3H11_2437at 695.697 kb on - strand, within Ac3H11_2437at 695.790 kb on + strand, within Ac3H11_2437at 695.790 kb on + strand, within Ac3H11_2437at 695.790 kb on + strand, within Ac3H11_2437at 695.791 kb on - strand, within Ac3H11_2437at 695.791 kb on - strand, within Ac3H11_2437at 695.791 kb on - strand, within Ac3H11_2437at 695.807 kb on + strand, within Ac3H11_2437at 696.254 kb on + strand, within Ac3H11_2437at 696.254 kb on + strand, within Ac3H11_2437at 696.254 kb on + strand, within Ac3H11_2437at 696.254 kb on + strand, within Ac3H11_2437at 696.254 kb on + strand, within Ac3H11_2437at 696.254 kb on + strand, within Ac3H11_2437at 696.254 kb on + strand, within Ac3H11_2437at 696.254 kb on + strand, within Ac3H11_2437at 696.254 kb on + strand, within Ac3H11_2437at 696.254 kb on + strand, within Ac3H11_2437at 696.254 kb on + strand, within Ac3H11_2437at 696.254 kb on + strand, within Ac3H11_2437at 696.255 kb on - strand, within Ac3H11_2437at 696.255 kb on - strand, within Ac3H11_2437at 696.255 kb on - strand, within Ac3H11_2437at 696.255 kb on - strand, within Ac3H11_2437at 696.255 kb on - strand, within Ac3H11_2437at 696.257 kb on + strand, within Ac3H11_2437at 696.257 kb on + strand, within Ac3H11_2437at 696.258 kb on - strand, within Ac3H11_2437at 696.258 kb on - strand, within Ac3H11_2437at 696.354 kb on - strand, within Ac3H11_2437at 696.447 kb on - strand, within Ac3H11_2437

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 35 mM
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694,237 - Ac3H11_2434 0.82 +0.1
694,344 + -0.7
694,466 + Ac3H11_2435 0.17 -0.4
694,466 + Ac3H11_2435 0.17 -0.6
694,466 + Ac3H11_2435 0.17 -0.8
694,467 - Ac3H11_2435 0.17 +2.0
694,467 - Ac3H11_2435 0.17 +0.5
694,467 - Ac3H11_2435 0.17 -0.8
694,467 - Ac3H11_2435 0.17 -0.3
694,737 - Ac3H11_2435 0.85 +0.3
694,769 + +0.3
694,770 - -0.2
694,770 - -0.5
694,877 + +0.1
694,877 + -0.6
694,878 - +0.1
694,941 - +3.3
694,954 + +0.2
694,955 - +0.5
694,955 - -0.4
694,982 + -0.1
694,983 - +0.0
695,078 - +0.6
695,078 - -0.7
695,078 - +0.2
695,078 - +0.6
695,170 + Ac3H11_2436 0.26 +1.8
695,170 + Ac3H11_2436 0.26 +0.1
695,171 - Ac3H11_2436 0.27 +1.1
695,212 + Ac3H11_2436 0.37 -0.6
695,696 + Ac3H11_2437 0.15 -0.3
695,696 + Ac3H11_2437 0.15 -0.5
695,697 - Ac3H11_2437 0.15 +0.9
695,790 + Ac3H11_2437 0.23 -0.1
695,790 + Ac3H11_2437 0.23 +0.1
695,790 + Ac3H11_2437 0.23 -0.6
695,791 - Ac3H11_2437 0.23 -0.1
695,791 - Ac3H11_2437 0.23 +0.1
695,791 - Ac3H11_2437 0.23 -0.1
695,807 + Ac3H11_2437 0.24 -0.6
696,254 + Ac3H11_2437 0.59 +0.4
696,254 + Ac3H11_2437 0.59 +0.5
696,254 + Ac3H11_2437 0.59 +0.1
696,254 + Ac3H11_2437 0.59 +0.6
696,254 + Ac3H11_2437 0.59 +0.4
696,254 + Ac3H11_2437 0.59 -2.5
696,254 + Ac3H11_2437 0.59 -0.9
696,254 + Ac3H11_2437 0.59 -0.3
696,254 + Ac3H11_2437 0.59 +0.7
696,254 + Ac3H11_2437 0.59 -0.6
696,254 + Ac3H11_2437 0.59 -0.2
696,254 + Ac3H11_2437 0.59 +0.5
696,255 - Ac3H11_2437 0.59 +0.4
696,255 - Ac3H11_2437 0.59 +0.8
696,255 - Ac3H11_2437 0.59 +0.2
696,255 - Ac3H11_2437 0.59 -1.6
696,255 - Ac3H11_2437 0.59 -2.9
696,257 + Ac3H11_2437 0.60 -1.1
696,257 + Ac3H11_2437 0.60 -0.4
696,258 - Ac3H11_2437 0.60 +0.9
696,258 - Ac3H11_2437 0.60 +0.9
696,354 - Ac3H11_2437 0.67 +0.1
696,447 - Ac3H11_2437 0.75 +0.7

Or see this region's nucleotide sequence