Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2392

Experiment: sodium fluoride 35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2391 and Ac3H11_2392 are separated by 89 nucleotidesAc3H11_2392 and Ac3H11_2393 are separated by 262 nucleotidesAc3H11_2393 and Ac3H11_2394 are separated by 95 nucleotidesAc3H11_2394 and Ac3H11_2395 are separated by 260 nucleotides Ac3H11_2391 - L-asparaginase (EC 3.5.1.1), at 649,050 to 650,003 _2391 Ac3H11_2392 - SOS-response repressor and protease LexA (EC 3.4.21.88), at 650,093 to 650,779 _2392 Ac3H11_2393 - hypothetical protein, at 651,042 to 651,185 _2393 Ac3H11_2394 - hypothetical protein, at 651,281 to 651,481 _2394 Ac3H11_2395 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 651,742 to 652,749 _2395 Position (kb) 650 651Strain fitness (log2 ratio) -2 -1 0 1 2 3at 649.377 kb on - strand, within Ac3H11_2391at 649.382 kb on + strand, within Ac3H11_2391at 649.899 kb on + strand, within Ac3H11_2391at 649.899 kb on + strand, within Ac3H11_2391at 649.899 kb on + strand, within Ac3H11_2391at 649.899 kb on + strand, within Ac3H11_2391at 649.900 kb on - strand, within Ac3H11_2391at 649.900 kb on - strand, within Ac3H11_2391at 649.921 kb on + strandat 649.922 kb on - strandat 649.953 kb on - strandat 650.009 kb on + strandat 650.010 kb on - strandat 650.010 kb on - strandat 650.069 kb on + strandat 650.341 kb on + strand, within Ac3H11_2392at 650.341 kb on + strand, within Ac3H11_2392at 650.465 kb on + strand, within Ac3H11_2392at 650.465 kb on + strand, within Ac3H11_2392at 650.465 kb on + strand, within Ac3H11_2392at 650.465 kb on + strand, within Ac3H11_2392at 650.465 kb on + strand, within Ac3H11_2392at 650.465 kb on + strand, within Ac3H11_2392at 650.465 kb on + strand, within Ac3H11_2392at 650.465 kb on + strand, within Ac3H11_2392at 650.465 kb on + strand, within Ac3H11_2392at 650.465 kb on + strand, within Ac3H11_2392at 650.465 kb on + strand, within Ac3H11_2392at 650.465 kb on + strand, within Ac3H11_2392at 650.465 kb on + strand, within Ac3H11_2392at 650.465 kb on + strand, within Ac3H11_2392at 650.465 kb on + strand, within Ac3H11_2392at 650.465 kb on + strand, within Ac3H11_2392at 650.465 kb on + strand, within Ac3H11_2392at 650.466 kb on - strand, within Ac3H11_2392at 650.466 kb on - strand, within Ac3H11_2392at 650.466 kb on - strand, within Ac3H11_2392at 650.466 kb on - strand, within Ac3H11_2392at 650.466 kb on - strand, within Ac3H11_2392at 650.504 kb on + strand, within Ac3H11_2392at 650.504 kb on + strand, within Ac3H11_2392at 650.504 kb on + strand, within Ac3H11_2392at 650.505 kb on - strand, within Ac3H11_2392at 650.777 kb on + strandat 650.777 kb on + strandat 650.777 kb on + strandat 650.777 kb on + strandat 650.777 kb on + strandat 650.777 kb on + strandat 650.778 kb on - strandat 650.778 kb on - strandat 650.778 kb on - strandat 650.778 kb on - strandat 650.830 kb on + strandat 650.831 kb on - strandat 650.831 kb on - strandat 650.831 kb on - strandat 650.880 kb on - strandat 650.880 kb on - strandat 651.000 kb on - strandat 651.093 kb on + strand, within Ac3H11_2393at 651.093 kb on + strand, within Ac3H11_2393at 651.093 kb on + strand, within Ac3H11_2393at 651.094 kb on - strand, within Ac3H11_2393at 651.318 kb on + strand, within Ac3H11_2394at 651.318 kb on + strand, within Ac3H11_2394at 651.319 kb on - strand, within Ac3H11_2394at 651.712 kb on - strandat 651.749 kb on + strandat 651.749 kb on + strandat 651.749 kb on + strandat 651.749 kb on + strandat 651.750 kb on - strandat 651.767 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 35 mM
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649,377 - Ac3H11_2391 0.34 -1.6
649,382 + Ac3H11_2391 0.35 +0.0
649,899 + Ac3H11_2391 0.89 -1.0
649,899 + Ac3H11_2391 0.89 -0.1
649,899 + Ac3H11_2391 0.89 +0.3
649,899 + Ac3H11_2391 0.89 -0.1
649,900 - Ac3H11_2391 0.89 -0.2
649,900 - Ac3H11_2391 0.89 +0.4
649,921 + -1.2
649,922 - -0.5
649,953 - -1.5
650,009 + -0.0
650,010 - +2.1
650,010 - +1.0
650,069 + +0.3
650,341 + Ac3H11_2392 0.36 +1.1
650,341 + Ac3H11_2392 0.36 +0.6
650,465 + Ac3H11_2392 0.54 +1.2
650,465 + Ac3H11_2392 0.54 +0.6
650,465 + Ac3H11_2392 0.54 -0.2
650,465 + Ac3H11_2392 0.54 +0.8
650,465 + Ac3H11_2392 0.54 +1.0
650,465 + Ac3H11_2392 0.54 +0.7
650,465 + Ac3H11_2392 0.54 +0.9
650,465 + Ac3H11_2392 0.54 +0.9
650,465 + Ac3H11_2392 0.54 +0.1
650,465 + Ac3H11_2392 0.54 +0.2
650,465 + Ac3H11_2392 0.54 +0.9
650,465 + Ac3H11_2392 0.54 -0.5
650,465 + Ac3H11_2392 0.54 +0.0
650,465 + Ac3H11_2392 0.54 +1.0
650,465 + Ac3H11_2392 0.54 +0.3
650,465 + Ac3H11_2392 0.54 +0.5
650,465 + Ac3H11_2392 0.54 +1.6
650,466 - Ac3H11_2392 0.54 -0.1
650,466 - Ac3H11_2392 0.54 +1.3
650,466 - Ac3H11_2392 0.54 +1.1
650,466 - Ac3H11_2392 0.54 +0.9
650,466 - Ac3H11_2392 0.54 +0.0
650,504 + Ac3H11_2392 0.60 +0.5
650,504 + Ac3H11_2392 0.60 +0.6
650,504 + Ac3H11_2392 0.60 -0.2
650,505 - Ac3H11_2392 0.60 +1.2
650,777 + -1.1
650,777 + -0.1
650,777 + -0.5
650,777 + +0.8
650,777 + -0.6
650,777 + -0.4
650,778 - +0.9
650,778 - +0.0
650,778 - -0.0
650,778 - +3.3
650,830 + -0.2
650,831 - +0.5
650,831 - -1.0
650,831 - +0.5
650,880 - +0.1
650,880 - +0.8
651,000 - -0.1
651,093 + Ac3H11_2393 0.35 +0.1
651,093 + Ac3H11_2393 0.35 +1.1
651,093 + Ac3H11_2393 0.35 +0.4
651,094 - Ac3H11_2393 0.36 -2.0
651,318 + Ac3H11_2394 0.18 -0.5
651,318 + Ac3H11_2394 0.18 +0.3
651,319 - Ac3H11_2394 0.19 +0.5
651,712 - -0.7
651,749 + -1.1
651,749 + -0.5
651,749 + -2.5
651,749 + -1.1
651,750 - -1.1
651,767 - -0.9

Or see this region's nucleotide sequence