Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1615

Experiment: sodium fluoride 35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1614 and Ac3H11_1615 overlap by 4 nucleotidesAc3H11_1615 and Ac3H11_1616 are separated by 47 nucleotides Ac3H11_1614 - Opine oxidase subunit A, at 196,830 to 198,236 _1614 Ac3H11_1615 - Sarcosine oxidase beta subunit (EC 1.5.3.1), at 198,233 to 199,405 _1615 Ac3H11_1616 - Extracellular solute-binding protein, family 1 precursor, at 199,453 to 200,529 _1616 Position (kb) 198 199 200Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 197.242 kb on - strand, within Ac3H11_1614at 197.242 kb on - strand, within Ac3H11_1614at 197.331 kb on + strand, within Ac3H11_1614at 197.331 kb on + strand, within Ac3H11_1614at 197.332 kb on - strand, within Ac3H11_1614at 197.332 kb on - strand, within Ac3H11_1614at 197.344 kb on - strand, within Ac3H11_1614at 197.349 kb on + strand, within Ac3H11_1614at 197.463 kb on + strand, within Ac3H11_1614at 197.463 kb on + strand, within Ac3H11_1614at 197.463 kb on + strand, within Ac3H11_1614at 197.464 kb on - strand, within Ac3H11_1614at 197.464 kb on - strand, within Ac3H11_1614at 197.464 kb on - strand, within Ac3H11_1614at 197.464 kb on - strand, within Ac3H11_1614at 197.464 kb on - strand, within Ac3H11_1614at 197.466 kb on + strand, within Ac3H11_1614at 197.467 kb on - strand, within Ac3H11_1614at 197.740 kb on - strand, within Ac3H11_1614at 198.148 kb on + strandat 198.557 kb on + strand, within Ac3H11_1615at 198.558 kb on - strand, within Ac3H11_1615at 198.619 kb on + strand, within Ac3H11_1615at 198.619 kb on + strand, within Ac3H11_1615at 198.620 kb on - strand, within Ac3H11_1615at 198.620 kb on - strand, within Ac3H11_1615at 198.838 kb on - strand, within Ac3H11_1615at 198.883 kb on + strand, within Ac3H11_1615at 198.884 kb on - strand, within Ac3H11_1615at 198.944 kb on + strand, within Ac3H11_1615at 198.986 kb on + strand, within Ac3H11_1615at 198.986 kb on + strand, within Ac3H11_1615at 198.987 kb on - strand, within Ac3H11_1615at 198.987 kb on - strand, within Ac3H11_1615at 199.166 kb on + strand, within Ac3H11_1615at 199.167 kb on - strand, within Ac3H11_1615at 199.167 kb on - strand, within Ac3H11_1615at 199.570 kb on + strand, within Ac3H11_1616at 199.570 kb on + strand, within Ac3H11_1616at 199.570 kb on + strand, within Ac3H11_1616at 199.571 kb on - strand, within Ac3H11_1616at 199.571 kb on - strand, within Ac3H11_1616at 199.571 kb on - strand, within Ac3H11_1616at 199.571 kb on - strand, within Ac3H11_1616at 199.606 kb on + strand, within Ac3H11_1616at 199.606 kb on + strand, within Ac3H11_1616at 199.607 kb on - strand, within Ac3H11_1616at 199.607 kb on - strand, within Ac3H11_1616at 199.607 kb on - strand, within Ac3H11_1616at 199.615 kb on + strand, within Ac3H11_1616at 199.615 kb on + strand, within Ac3H11_1616at 199.615 kb on + strand, within Ac3H11_1616at 199.615 kb on + strandat 199.615 kb on + strand, within Ac3H11_1616at 199.615 kb on + strand, within Ac3H11_1616at 199.615 kb on + strand, within Ac3H11_1616at 199.616 kb on - strand, within Ac3H11_1616at 199.616 kb on - strand, within Ac3H11_1616at 199.655 kb on + strand, within Ac3H11_1616at 199.655 kb on + strand, within Ac3H11_1616at 199.655 kb on + strand, within Ac3H11_1616at 199.655 kb on + strand, within Ac3H11_1616at 199.655 kb on + strand, within Ac3H11_1616at 199.656 kb on - strand, within Ac3H11_1616at 199.656 kb on - strand, within Ac3H11_1616at 199.656 kb on - strand, within Ac3H11_1616at 199.819 kb on + strand, within Ac3H11_1616at 199.820 kb on - strand, within Ac3H11_1616at 199.885 kb on + strand, within Ac3H11_1616at 199.885 kb on + strand, within Ac3H11_1616at 199.957 kb on + strand, within Ac3H11_1616at 199.957 kb on + strand, within Ac3H11_1616at 199.957 kb on + strand, within Ac3H11_1616at 199.957 kb on + strand, within Ac3H11_1616at 199.957 kb on + strand, within Ac3H11_1616at 199.958 kb on - strand, within Ac3H11_1616at 199.958 kb on - strand, within Ac3H11_1616at 200.110 kb on + strand, within Ac3H11_1616at 200.110 kb on + strand, within Ac3H11_1616at 200.110 kb on + strand, within Ac3H11_1616at 200.110 kb on + strand, within Ac3H11_1616at 200.110 kb on + strand, within Ac3H11_1616at 200.110 kb on + strand, within Ac3H11_1616at 200.111 kb on - strand, within Ac3H11_1616at 200.111 kb on - strand, within Ac3H11_1616at 200.111 kb on - strand, within Ac3H11_1616at 200.111 kb on - strand, within Ac3H11_1616at 200.111 kb on - strand, within Ac3H11_1616at 200.111 kb on - strand, within Ac3H11_1616at 200.224 kb on + strand, within Ac3H11_1616at 200.224 kb on + strand, within Ac3H11_1616at 200.224 kb on + strand, within Ac3H11_1616at 200.225 kb on - strand, within Ac3H11_1616at 200.225 kb on - strand, within Ac3H11_1616

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 35 mM
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197,242 - Ac3H11_1614 0.29 +0.2
197,242 - Ac3H11_1614 0.29 +1.1
197,331 + Ac3H11_1614 0.36 +1.3
197,331 + Ac3H11_1614 0.36 -0.5
197,332 - Ac3H11_1614 0.36 -0.6
197,332 - Ac3H11_1614 0.36 +0.1
197,344 - Ac3H11_1614 0.37 -1.1
197,349 + Ac3H11_1614 0.37 +1.4
197,463 + Ac3H11_1614 0.45 -0.0
197,463 + Ac3H11_1614 0.45 +1.1
197,463 + Ac3H11_1614 0.45 +0.8
197,464 - Ac3H11_1614 0.45 -0.3
197,464 - Ac3H11_1614 0.45 -0.1
197,464 - Ac3H11_1614 0.45 +0.7
197,464 - Ac3H11_1614 0.45 +0.6
197,464 - Ac3H11_1614 0.45 +0.6
197,466 + Ac3H11_1614 0.45 +0.9
197,467 - Ac3H11_1614 0.45 +0.2
197,740 - Ac3H11_1614 0.65 +0.4
198,148 + +1.4
198,557 + Ac3H11_1615 0.28 +1.3
198,558 - Ac3H11_1615 0.28 -0.6
198,619 + Ac3H11_1615 0.33 +1.5
198,619 + Ac3H11_1615 0.33 +0.7
198,620 - Ac3H11_1615 0.33 -0.0
198,620 - Ac3H11_1615 0.33 +0.6
198,838 - Ac3H11_1615 0.52 -0.2
198,883 + Ac3H11_1615 0.55 +0.7
198,884 - Ac3H11_1615 0.55 +0.9
198,944 + Ac3H11_1615 0.61 +0.9
198,986 + Ac3H11_1615 0.64 +1.0
198,986 + Ac3H11_1615 0.64 +0.5
198,987 - Ac3H11_1615 0.64 -0.0
198,987 - Ac3H11_1615 0.64 -0.8
199,166 + Ac3H11_1615 0.80 +1.0
199,167 - Ac3H11_1615 0.80 -0.0
199,167 - Ac3H11_1615 0.80 +0.4
199,570 + Ac3H11_1616 0.11 -0.3
199,570 + Ac3H11_1616 0.11 -0.4
199,570 + Ac3H11_1616 0.11 +0.0
199,571 - Ac3H11_1616 0.11 +0.4
199,571 - Ac3H11_1616 0.11 -0.8
199,571 - Ac3H11_1616 0.11 +0.1
199,571 - Ac3H11_1616 0.11 +0.2
199,606 + Ac3H11_1616 0.14 +0.0
199,606 + Ac3H11_1616 0.14 +0.5
199,607 - Ac3H11_1616 0.14 +0.2
199,607 - Ac3H11_1616 0.14 +0.1
199,607 - Ac3H11_1616 0.14 -0.5
199,615 + Ac3H11_1616 0.15 -0.5
199,615 + Ac3H11_1616 0.15 +1.0
199,615 + Ac3H11_1616 0.15 -0.7
199,615 + +3.1
199,615 + Ac3H11_1616 0.15 +0.2
199,615 + Ac3H11_1616 0.15 +0.2
199,615 + Ac3H11_1616 0.15 +0.6
199,616 - Ac3H11_1616 0.15 -0.0
199,616 - Ac3H11_1616 0.15 +0.0
199,655 + Ac3H11_1616 0.19 -0.0
199,655 + Ac3H11_1616 0.19 +0.2
199,655 + Ac3H11_1616 0.19 +0.6
199,655 + Ac3H11_1616 0.19 +0.2
199,655 + Ac3H11_1616 0.19 -3.0
199,656 - Ac3H11_1616 0.19 +0.7
199,656 - Ac3H11_1616 0.19 +0.5
199,656 - Ac3H11_1616 0.19 -0.9
199,819 + Ac3H11_1616 0.34 -0.4
199,820 - Ac3H11_1616 0.34 +0.7
199,885 + Ac3H11_1616 0.40 +0.2
199,885 + Ac3H11_1616 0.40 -0.3
199,957 + Ac3H11_1616 0.47 +0.3
199,957 + Ac3H11_1616 0.47 -0.3
199,957 + Ac3H11_1616 0.47 +1.1
199,957 + Ac3H11_1616 0.47 +0.9
199,957 + Ac3H11_1616 0.47 +0.7
199,958 - Ac3H11_1616 0.47 -0.9
199,958 - Ac3H11_1616 0.47 +1.4
200,110 + Ac3H11_1616 0.61 -1.9
200,110 + Ac3H11_1616 0.61 +0.2
200,110 + Ac3H11_1616 0.61 -0.1
200,110 + Ac3H11_1616 0.61 +0.0
200,110 + Ac3H11_1616 0.61 +1.0
200,110 + Ac3H11_1616 0.61 -0.4
200,111 - Ac3H11_1616 0.61 -2.0
200,111 - Ac3H11_1616 0.61 -2.2
200,111 - Ac3H11_1616 0.61 +0.1
200,111 - Ac3H11_1616 0.61 -1.7
200,111 - Ac3H11_1616 0.61 -0.5
200,111 - Ac3H11_1616 0.61 +1.5
200,224 + Ac3H11_1616 0.72 +0.9
200,224 + Ac3H11_1616 0.72 -0.1
200,224 + Ac3H11_1616 0.72 -0.2
200,225 - Ac3H11_1616 0.72 +0.2
200,225 - Ac3H11_1616 0.72 -0.4

Or see this region's nucleotide sequence