Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1184

Experiment: sodium fluoride 35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1183 and Ac3H11_1184 are separated by 136 nucleotidesAc3H11_1184 and Ac3H11_1185 are separated by 88 nucleotides Ac3H11_1183 - 4-oxalomesaconate hydratase (EC 4.2.1.83), at 20,712 to 21,746 _1183 Ac3H11_1184 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.17), at 21,883 to 22,566 _1184 Ac3H11_1185 - putative exported protein, at 22,655 to 23,665 _1185 Position (kb) 21 22 23Strain fitness (log2 ratio) -2 -1 0 1 2at 21.120 kb on + strand, within Ac3H11_1183at 21.210 kb on + strand, within Ac3H11_1183at 21.211 kb on - strand, within Ac3H11_1183at 21.228 kb on + strand, within Ac3H11_1183at 21.405 kb on + strand, within Ac3H11_1183at 21.406 kb on - strand, within Ac3H11_1183at 21.501 kb on + strand, within Ac3H11_1183at 21.612 kb on + strand, within Ac3H11_1183at 21.613 kb on - strand, within Ac3H11_1183at 21.613 kb on - strand, within Ac3H11_1183at 21.613 kb on - strand, within Ac3H11_1183at 21.616 kb on - strand, within Ac3H11_1183at 21.634 kb on - strand, within Ac3H11_1183at 21.634 kb on - strand, within Ac3H11_1183at 21.634 kb on - strand, within Ac3H11_1183at 21.681 kb on + strandat 21.682 kb on - strandat 21.682 kb on - strandat 21.886 kb on + strandat 21.887 kb on - strandat 21.887 kb on - strandat 21.887 kb on - strandat 21.893 kb on + strandat 21.893 kb on + strandat 21.894 kb on - strandat 22.165 kb on + strand, within Ac3H11_1184at 22.166 kb on - strand, within Ac3H11_1184at 22.516 kb on + strandat 22.516 kb on + strandat 22.516 kb on + strandat 22.516 kb on + strandat 22.517 kb on - strandat 22.517 kb on - strandat 22.517 kb on - strandat 22.517 kb on - strandat 22.517 kb on - strandat 22.517 kb on - strandat 22.608 kb on + strandat 22.609 kb on - strandat 23.015 kb on + strand, within Ac3H11_1185at 23.097 kb on - strand, within Ac3H11_1185at 23.097 kb on - strand, within Ac3H11_1185at 23.153 kb on + strand, within Ac3H11_1185at 23.154 kb on - strand, within Ac3H11_1185at 23.154 kb on - strand, within Ac3H11_1185at 23.261 kb on + strand, within Ac3H11_1185at 23.261 kb on + strand, within Ac3H11_1185at 23.327 kb on + strand, within Ac3H11_1185

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 35 mM
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21,120 + Ac3H11_1183 0.39 -0.6
21,210 + Ac3H11_1183 0.48 -1.2
21,211 - Ac3H11_1183 0.48 -1.0
21,228 + Ac3H11_1183 0.50 -0.1
21,405 + Ac3H11_1183 0.67 -0.5
21,406 - Ac3H11_1183 0.67 -0.1
21,501 + Ac3H11_1183 0.76 +2.1
21,612 + Ac3H11_1183 0.87 -1.4
21,613 - Ac3H11_1183 0.87 +0.6
21,613 - Ac3H11_1183 0.87 -0.0
21,613 - Ac3H11_1183 0.87 +0.4
21,616 - Ac3H11_1183 0.87 -1.4
21,634 - Ac3H11_1183 0.89 -1.1
21,634 - Ac3H11_1183 0.89 +0.9
21,634 - Ac3H11_1183 0.89 +0.7
21,681 + -0.7
21,682 - -0.5
21,682 - -0.6
21,886 + -0.5
21,887 - -1.0
21,887 - -1.3
21,887 - -1.5
21,893 + -0.3
21,893 + -0.3
21,894 - -0.1
22,165 + Ac3H11_1184 0.41 +0.9
22,166 - Ac3H11_1184 0.41 +0.6
22,516 + -0.1
22,516 + -0.2
22,516 + +2.4
22,516 + -0.3
22,517 - +0.1
22,517 - -0.4
22,517 - +0.1
22,517 - +0.7
22,517 - -0.4
22,517 - +0.6
22,608 + -2.1
22,609 - -1.3
23,015 + Ac3H11_1185 0.36 +0.5
23,097 - Ac3H11_1185 0.44 -0.6
23,097 - Ac3H11_1185 0.44 +0.6
23,153 + Ac3H11_1185 0.49 -1.2
23,154 - Ac3H11_1185 0.49 +0.8
23,154 - Ac3H11_1185 0.49 +0.3
23,261 + Ac3H11_1185 0.60 +0.1
23,261 + Ac3H11_1185 0.60 +0.4
23,327 + Ac3H11_1185 0.66 +0.2

Or see this region's nucleotide sequence