Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1116

Experiment: sodium fluoride 35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1114 and Ac3H11_1115 are separated by 3 nucleotidesAc3H11_1115 and Ac3H11_1116 are separated by 122 nucleotidesAc3H11_1116 and Ac3H11_1117 are separated by 233 nucleotides Ac3H11_1114 - Adenosine deaminase (EC 3.5.4.4), at 56,847 to 57,899 _1114 Ac3H11_1115 - Histidine triad (HIT) nucleotide-binding protein, similarity with At5g48545 and yeast YDL125C (HNT1), at 57,903 to 58,349 _1115 Ac3H11_1116 - Nucleoside ABC transporter, periplasmic nucleoside-binding protein, at 58,472 to 59,584 _1116 Ac3H11_1117 - Guanine deaminase (EC 3.5.4.3), at 59,818 to 61,092 _1117 Position (kb) 58 59 60Strain fitness (log2 ratio) -2 -1 0 1 2at 57.487 kb on - strand, within Ac3H11_1114at 57.487 kb on - strand, within Ac3H11_1114at 57.487 kb on - strand, within Ac3H11_1114at 57.715 kb on - strand, within Ac3H11_1114at 57.726 kb on + strand, within Ac3H11_1114at 57.726 kb on + strand, within Ac3H11_1114at 57.727 kb on - strand, within Ac3H11_1114at 57.727 kb on - strand, within Ac3H11_1114at 57.727 kb on - strand, within Ac3H11_1114at 57.786 kb on + strand, within Ac3H11_1114at 57.786 kb on + strand, within Ac3H11_1114at 57.786 kb on + strand, within Ac3H11_1114at 57.786 kb on + strand, within Ac3H11_1114at 57.786 kb on + strand, within Ac3H11_1114at 57.787 kb on - strand, within Ac3H11_1114at 57.940 kb on + strandat 57.940 kb on + strandat 58.264 kb on + strand, within Ac3H11_1115at 58.264 kb on + strand, within Ac3H11_1115at 58.265 kb on - strand, within Ac3H11_1115at 58.384 kb on + strandat 58.384 kb on + strandat 58.384 kb on + strandat 58.384 kb on + strandat 58.385 kb on - strandat 58.385 kb on - strandat 58.385 kb on - strandat 58.385 kb on - strandat 58.398 kb on + strandat 58.399 kb on - strandat 58.403 kb on + strandat 58.460 kb on + strandat 58.460 kb on + strandat 58.460 kb on + strandat 58.460 kb on + strandat 58.460 kb on + strandat 58.460 kb on + strandat 58.460 kb on + strandat 58.461 kb on - strandat 58.461 kb on - strandat 58.461 kb on - strandat 58.461 kb on - strandat 58.461 kb on - strandat 58.461 kb on - strandat 58.461 kb on - strandat 58.461 kb on - strandat 58.461 kb on - strandat 58.461 kb on - strandat 58.461 kb on - strandat 58.461 kb on - strandat 58.461 kb on - strandat 58.551 kb on + strandat 58.598 kb on + strand, within Ac3H11_1116at 58.598 kb on + strand, within Ac3H11_1116at 58.598 kb on + strand, within Ac3H11_1116at 58.598 kb on + strand, within Ac3H11_1116at 58.599 kb on - strand, within Ac3H11_1116at 58.599 kb on - strand, within Ac3H11_1116at 58.790 kb on + strand, within Ac3H11_1116at 58.790 kb on + strand, within Ac3H11_1116at 58.790 kb on + strand, within Ac3H11_1116at 58.790 kb on + strand, within Ac3H11_1116at 58.791 kb on - strand, within Ac3H11_1116at 58.791 kb on - strand, within Ac3H11_1116at 58.791 kb on - strand, within Ac3H11_1116at 58.791 kb on - strand, within Ac3H11_1116at 58.856 kb on + strand, within Ac3H11_1116at 58.857 kb on - strand, within Ac3H11_1116at 58.895 kb on + strand, within Ac3H11_1116at 58.898 kb on + strand, within Ac3H11_1116at 58.898 kb on + strand, within Ac3H11_1116at 58.898 kb on + strand, within Ac3H11_1116at 58.898 kb on + strand, within Ac3H11_1116at 58.899 kb on - strand, within Ac3H11_1116at 59.204 kb on + strand, within Ac3H11_1116at 59.273 kb on + strand, within Ac3H11_1116at 59.274 kb on - strand, within Ac3H11_1116at 59.276 kb on + strand, within Ac3H11_1116at 59.277 kb on - strand, within Ac3H11_1116at 59.277 kb on - strand, within Ac3H11_1116at 59.631 kb on - strandat 59.631 kb on - strandat 59.631 kb on - strandat 59.634 kb on - strandat 59.634 kb on - strandat 59.634 kb on - strandat 59.634 kb on - strandat 59.640 kb on - strandat 59.640 kb on - strandat 59.697 kb on + strandat 59.737 kb on - strandat 59.744 kb on - strandat 59.757 kb on + strandat 59.757 kb on + strandat 59.759 kb on + strandat 59.759 kb on + strandat 59.760 kb on - strandat 59.760 kb on - strandat 59.760 kb on - strandat 59.801 kb on + strandat 59.801 kb on + strandat 59.801 kb on + strandat 59.801 kb on + strandat 59.802 kb on - strandat 59.802 kb on - strandat 59.848 kb on + strandat 59.849 kb on - strandat 59.849 kb on - strandat 59.849 kb on - strandat 59.849 kb on - strandat 59.849 kb on - strandat 59.849 kb on - strandat 59.849 kb on - strandat 59.849 kb on - strandat 60.073 kb on + strand, within Ac3H11_1117at 60.073 kb on + strand, within Ac3H11_1117at 60.073 kb on + strand, within Ac3H11_1117at 60.073 kb on + strand, within Ac3H11_1117at 60.073 kb on + strand, within Ac3H11_1117at 60.073 kb on + strand, within Ac3H11_1117at 60.073 kb on + strand, within Ac3H11_1117at 60.073 kb on + strand, within Ac3H11_1117at 60.074 kb on - strand, within Ac3H11_1117at 60.074 kb on - strand, within Ac3H11_1117at 60.074 kb on - strand, within Ac3H11_1117at 60.074 kb on - strand, within Ac3H11_1117at 60.074 kb on - strand, within Ac3H11_1117at 60.074 kb on - strand, within Ac3H11_1117at 60.074 kb on - strand, within Ac3H11_1117at 60.112 kb on + strand, within Ac3H11_1117at 60.113 kb on - strand, within Ac3H11_1117at 60.113 kb on - strand, within Ac3H11_1117at 60.370 kb on + strand, within Ac3H11_1117at 60.532 kb on + strand, within Ac3H11_1117at 60.532 kb on + strand, within Ac3H11_1117at 60.532 kb on + strand, within Ac3H11_1117at 60.532 kb on + strand, within Ac3H11_1117at 60.532 kb on + strand, within Ac3H11_1117at 60.533 kb on - strand, within Ac3H11_1117at 60.533 kb on - strand, within Ac3H11_1117at 60.533 kb on - strand, within Ac3H11_1117at 60.533 kb on - strand, within Ac3H11_1117at 60.533 kb on - strand, within Ac3H11_1117at 60.544 kb on + strand, within Ac3H11_1117at 60.544 kb on + strand, within Ac3H11_1117at 60.545 kb on - strand, within Ac3H11_1117at 60.545 kb on - strand, within Ac3H11_1117at 60.580 kb on + strand, within Ac3H11_1117at 60.581 kb on - strand, within Ac3H11_1117at 60.581 kb on - strand, within Ac3H11_1117at 60.581 kb on - strand, within Ac3H11_1117

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 35 mM
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57,487 - Ac3H11_1114 0.61 -0.9
57,487 - Ac3H11_1114 0.61 +0.1
57,487 - Ac3H11_1114 0.61 +0.5
57,715 - Ac3H11_1114 0.82 -0.3
57,726 + Ac3H11_1114 0.83 -0.4
57,726 + Ac3H11_1114 0.83 -0.1
57,727 - Ac3H11_1114 0.84 -0.2
57,727 - Ac3H11_1114 0.84 +0.3
57,727 - Ac3H11_1114 0.84 -0.2
57,786 + Ac3H11_1114 0.89 -1.8
57,786 + Ac3H11_1114 0.89 +0.0
57,786 + Ac3H11_1114 0.89 -0.4
57,786 + Ac3H11_1114 0.89 -0.1
57,786 + Ac3H11_1114 0.89 -0.8
57,787 - Ac3H11_1114 0.89 -0.4
57,940 + +0.2
57,940 + -1.5
58,264 + Ac3H11_1115 0.81 +0.6
58,264 + Ac3H11_1115 0.81 -0.8
58,265 - Ac3H11_1115 0.81 -0.1
58,384 + -0.8
58,384 + -0.0
58,384 + +1.1
58,384 + +0.1
58,385 - +0.8
58,385 - -0.6
58,385 - -0.0
58,385 - -0.9
58,398 + -1.2
58,399 - -0.7
58,403 + -0.0
58,460 + -0.0
58,460 + +0.4
58,460 + +0.1
58,460 + +0.1
58,460 + +0.8
58,460 + +0.5
58,460 + -0.1
58,461 - +0.3
58,461 - +0.7
58,461 - +0.5
58,461 - +0.1
58,461 - +0.8
58,461 - -0.8
58,461 - +0.7
58,461 - +0.5
58,461 - +1.1
58,461 - +0.7
58,461 - +0.1
58,461 - +1.6
58,461 - +0.1
58,551 + +1.1
58,598 + Ac3H11_1116 0.11 +1.0
58,598 + Ac3H11_1116 0.11 +0.2
58,598 + Ac3H11_1116 0.11 -0.8
58,598 + Ac3H11_1116 0.11 -0.3
58,599 - Ac3H11_1116 0.11 +0.8
58,599 - Ac3H11_1116 0.11 +1.3
58,790 + Ac3H11_1116 0.29 +0.5
58,790 + Ac3H11_1116 0.29 +0.2
58,790 + Ac3H11_1116 0.29 +1.2
58,790 + Ac3H11_1116 0.29 +0.7
58,791 - Ac3H11_1116 0.29 +0.6
58,791 - Ac3H11_1116 0.29 +0.0
58,791 - Ac3H11_1116 0.29 -1.0
58,791 - Ac3H11_1116 0.29 +1.2
58,856 + Ac3H11_1116 0.35 -0.5
58,857 - Ac3H11_1116 0.35 +0.6
58,895 + Ac3H11_1116 0.38 +0.2
58,898 + Ac3H11_1116 0.38 +0.3
58,898 + Ac3H11_1116 0.38 +1.4
58,898 + Ac3H11_1116 0.38 +0.0
58,898 + Ac3H11_1116 0.38 +0.6
58,899 - Ac3H11_1116 0.38 +1.3
59,204 + Ac3H11_1116 0.66 +0.5
59,273 + Ac3H11_1116 0.72 +1.3
59,274 - Ac3H11_1116 0.72 +0.2
59,276 + Ac3H11_1116 0.72 +1.7
59,277 - Ac3H11_1116 0.72 +0.1
59,277 - Ac3H11_1116 0.72 +0.4
59,631 - +0.3
59,631 - -0.1
59,631 - -1.7
59,634 - +0.1
59,634 - -0.1
59,634 - +1.7
59,634 - +0.2
59,640 - +0.8
59,640 - +0.3
59,697 + +0.9
59,737 - +0.2
59,744 - -1.5
59,757 + +0.3
59,757 + -0.5
59,759 + +0.8
59,759 + -0.5
59,760 - +0.7
59,760 - -0.2
59,760 - -0.0
59,801 + +0.2
59,801 + +0.0
59,801 + +0.9
59,801 + -0.0
59,802 - -0.4
59,802 - +0.3
59,848 + +0.1
59,849 - +1.1
59,849 - -1.8
59,849 - +0.7
59,849 - +0.8
59,849 - +0.5
59,849 - +0.2
59,849 - -0.3
59,849 - +0.1
60,073 + Ac3H11_1117 0.20 +0.7
60,073 + Ac3H11_1117 0.20 +0.5
60,073 + Ac3H11_1117 0.20 +1.4
60,073 + Ac3H11_1117 0.20 -0.6
60,073 + Ac3H11_1117 0.20 +0.9
60,073 + Ac3H11_1117 0.20 +0.5
60,073 + Ac3H11_1117 0.20 -0.2
60,073 + Ac3H11_1117 0.20 +0.1
60,074 - Ac3H11_1117 0.20 +0.5
60,074 - Ac3H11_1117 0.20 -0.4
60,074 - Ac3H11_1117 0.20 -0.2
60,074 - Ac3H11_1117 0.20 +0.5
60,074 - Ac3H11_1117 0.20 -0.2
60,074 - Ac3H11_1117 0.20 -0.6
60,074 - Ac3H11_1117 0.20 -0.1
60,112 + Ac3H11_1117 0.23 -0.9
60,113 - Ac3H11_1117 0.23 +1.1
60,113 - Ac3H11_1117 0.23 +0.6
60,370 + Ac3H11_1117 0.43 -0.4
60,532 + Ac3H11_1117 0.56 +0.2
60,532 + Ac3H11_1117 0.56 -1.0
60,532 + Ac3H11_1117 0.56 +0.1
60,532 + Ac3H11_1117 0.56 +0.5
60,532 + Ac3H11_1117 0.56 +0.2
60,533 - Ac3H11_1117 0.56 +0.9
60,533 - Ac3H11_1117 0.56 -1.6
60,533 - Ac3H11_1117 0.56 +2.3
60,533 - Ac3H11_1117 0.56 -0.8
60,533 - Ac3H11_1117 0.56 +1.5
60,544 + Ac3H11_1117 0.57 -0.1
60,544 + Ac3H11_1117 0.57 -0.1
60,545 - Ac3H11_1117 0.57 +1.1
60,545 - Ac3H11_1117 0.57 +0.9
60,580 + Ac3H11_1117 0.60 +1.3
60,581 - Ac3H11_1117 0.60 +0.2
60,581 - Ac3H11_1117 0.60 +0.4
60,581 - Ac3H11_1117 0.60 +0.0

Or see this region's nucleotide sequence