Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1111

Experiment: sodium fluoride 35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1110 and Ac3H11_1111 are separated by 84 nucleotidesAc3H11_1111 and Ac3H11_1112 are separated by 109 nucleotides Ac3H11_1110 - Nucleoside ABC transporter, permease protein 1, at 52,480 to 53,478 _1110 Ac3H11_1111 - Putative deoxyribose-specific ABC transporter, permease protein, at 53,563 to 54,483 _1111 Ac3H11_1112 - Nucleoside ABC transporter, periplasmic nucleoside-binding protein, at 54,593 to 55,759 _1112 Position (kb) 53 54 55Strain fitness (log2 ratio) -2 -1 0 1 2 3at 52.570 kb on + strandat 52.570 kb on + strandat 52.570 kb on + strandat 52.571 kb on - strandat 52.571 kb on - strandat 52.571 kb on - strandat 52.571 kb on - strandat 52.861 kb on + strand, within Ac3H11_1110at 52.861 kb on + strand, within Ac3H11_1110at 52.861 kb on + strand, within Ac3H11_1110at 52.861 kb on + strand, within Ac3H11_1110at 52.861 kb on + strand, within Ac3H11_1110at 52.861 kb on + strand, within Ac3H11_1110at 52.861 kb on + strand, within Ac3H11_1110at 52.861 kb on + strand, within Ac3H11_1110at 52.861 kb on + strand, within Ac3H11_1110at 52.862 kb on - strand, within Ac3H11_1110at 52.862 kb on - strand, within Ac3H11_1110at 52.862 kb on - strand, within Ac3H11_1110at 52.862 kb on - strand, within Ac3H11_1110at 52.862 kb on - strand, within Ac3H11_1110at 52.862 kb on - strand, within Ac3H11_1110at 52.862 kb on - strand, within Ac3H11_1110at 52.885 kb on + strand, within Ac3H11_1110at 52.894 kb on + strand, within Ac3H11_1110at 52.894 kb on + strand, within Ac3H11_1110at 52.894 kb on + strand, within Ac3H11_1110at 52.894 kb on + strand, within Ac3H11_1110at 52.894 kb on + strand, within Ac3H11_1110at 52.894 kb on + strand, within Ac3H11_1110at 52.894 kb on + strand, within Ac3H11_1110at 52.894 kb on + strand, within Ac3H11_1110at 52.894 kb on + strand, within Ac3H11_1110at 52.895 kb on - strand, within Ac3H11_1110at 52.895 kb on - strand, within Ac3H11_1110at 52.895 kb on - strand, within Ac3H11_1110at 52.895 kb on - strand, within Ac3H11_1110at 52.895 kb on - strand, within Ac3H11_1110at 52.921 kb on + strand, within Ac3H11_1110at 52.922 kb on - strand, within Ac3H11_1110at 52.922 kb on - strand, within Ac3H11_1110at 53.107 kb on + strand, within Ac3H11_1110at 53.107 kb on + strand, within Ac3H11_1110at 53.221 kb on + strand, within Ac3H11_1110at 53.221 kb on + strand, within Ac3H11_1110at 53.221 kb on + strand, within Ac3H11_1110at 53.221 kb on + strand, within Ac3H11_1110at 53.221 kb on + strand, within Ac3H11_1110at 53.221 kb on + strand, within Ac3H11_1110at 53.222 kb on - strand, within Ac3H11_1110at 53.222 kb on - strand, within Ac3H11_1110at 53.222 kb on - strand, within Ac3H11_1110at 53.222 kb on - strand, within Ac3H11_1110at 53.222 kb on - strand, within Ac3H11_1110at 53.222 kb on - strand, within Ac3H11_1110at 53.222 kb on - strand, within Ac3H11_1110at 53.323 kb on + strand, within Ac3H11_1110at 53.323 kb on + strand, within Ac3H11_1110at 53.323 kb on + strand, within Ac3H11_1110at 53.323 kb on + strand, within Ac3H11_1110at 53.324 kb on - strand, within Ac3H11_1110at 53.434 kb on + strandat 53.468 kb on + strandat 53.469 kb on - strandat 53.469 kb on - strandat 53.502 kb on + strandat 53.502 kb on + strandat 53.502 kb on + strandat 53.502 kb on + strandat 53.502 kb on + strandat 53.503 kb on - strandat 53.503 kb on - strandat 53.563 kb on - strandat 53.572 kb on + strandat 53.573 kb on - strandat 53.573 kb on - strandat 53.827 kb on + strand, within Ac3H11_1111at 53.827 kb on + strand, within Ac3H11_1111at 53.827 kb on + strand, within Ac3H11_1111at 53.828 kb on - strand, within Ac3H11_1111at 53.890 kb on + strand, within Ac3H11_1111at 53.890 kb on + strand, within Ac3H11_1111at 53.890 kb on + strand, within Ac3H11_1111at 53.890 kb on + strand, within Ac3H11_1111at 53.890 kb on + strand, within Ac3H11_1111at 53.890 kb on + strand, within Ac3H11_1111at 53.890 kb on + strand, within Ac3H11_1111at 53.890 kb on + strand, within Ac3H11_1111at 53.890 kb on + strand, within Ac3H11_1111at 53.890 kb on + strand, within Ac3H11_1111at 53.890 kb on + strand, within Ac3H11_1111at 53.890 kb on + strand, within Ac3H11_1111at 53.890 kb on + strand, within Ac3H11_1111at 53.890 kb on + strand, within Ac3H11_1111at 53.891 kb on - strand, within Ac3H11_1111at 53.891 kb on - strand, within Ac3H11_1111at 53.891 kb on - strand, within Ac3H11_1111at 53.891 kb on - strand, within Ac3H11_1111at 53.891 kb on - strand, within Ac3H11_1111at 53.891 kb on - strand, within Ac3H11_1111at 53.891 kb on - strand, within Ac3H11_1111at 53.891 kb on - strand, within Ac3H11_1111at 53.891 kb on - strand, within Ac3H11_1111at 53.891 kb on - strand, within Ac3H11_1111at 53.923 kb on + strand, within Ac3H11_1111at 53.923 kb on + strand, within Ac3H11_1111at 53.923 kb on + strand, within Ac3H11_1111at 53.923 kb on + strand, within Ac3H11_1111at 53.924 kb on - strand, within Ac3H11_1111at 53.924 kb on - strand, within Ac3H11_1111at 54.035 kb on - strand, within Ac3H11_1111at 54.172 kb on + strand, within Ac3H11_1111at 54.172 kb on + strand, within Ac3H11_1111at 54.172 kb on + strand, within Ac3H11_1111at 54.172 kb on + strand, within Ac3H11_1111at 54.172 kb on + strand, within Ac3H11_1111at 54.172 kb on + strand, within Ac3H11_1111at 54.172 kb on + strand, within Ac3H11_1111at 54.172 kb on + strand, within Ac3H11_1111at 54.172 kb on + strand, within Ac3H11_1111at 54.173 kb on - strand, within Ac3H11_1111at 54.173 kb on - strand, within Ac3H11_1111at 54.173 kb on - strand, within Ac3H11_1111at 54.173 kb on - strand, within Ac3H11_1111at 54.173 kb on - strand, within Ac3H11_1111at 54.173 kb on - strand, within Ac3H11_1111at 54.173 kb on - strand, within Ac3H11_1111at 54.173 kb on - strand, within Ac3H11_1111at 54.173 kb on - strand, within Ac3H11_1111at 54.173 kb on - strand, within Ac3H11_1111at 54.173 kb on - strand, within Ac3H11_1111at 54.187 kb on + strand, within Ac3H11_1111at 54.188 kb on - strand, within Ac3H11_1111at 54.292 kb on + strand, within Ac3H11_1111at 54.292 kb on + strand, within Ac3H11_1111at 54.292 kb on + strand, within Ac3H11_1111at 54.292 kb on + strand, within Ac3H11_1111at 54.292 kb on + strand, within Ac3H11_1111at 54.293 kb on - strand, within Ac3H11_1111at 54.293 kb on - strand, within Ac3H11_1111at 54.293 kb on - strand, within Ac3H11_1111at 54.293 kb on - strand, within Ac3H11_1111at 54.379 kb on + strand, within Ac3H11_1111at 54.379 kb on + strand, within Ac3H11_1111at 54.380 kb on - strand, within Ac3H11_1111at 54.411 kb on - strandat 54.470 kb on - strandat 54.522 kb on - strandat 54.533 kb on + strandat 54.533 kb on + strandat 54.534 kb on - strandat 54.534 kb on - strandat 54.569 kb on + strandat 54.569 kb on + strandat 54.569 kb on + strandat 54.569 kb on + strandat 54.570 kb on - strandat 54.570 kb on - strandat 54.580 kb on + strandat 54.580 kb on + strandat 54.770 kb on + strand, within Ac3H11_1112at 54.770 kb on + strand, within Ac3H11_1112at 54.770 kb on + strand, within Ac3H11_1112at 54.962 kb on + strand, within Ac3H11_1112at 54.963 kb on - strand, within Ac3H11_1112at 54.963 kb on - strand, within Ac3H11_1112at 55.029 kb on - strand, within Ac3H11_1112at 55.029 kb on - strand, within Ac3H11_1112at 55.055 kb on + strand, within Ac3H11_1112at 55.055 kb on + strand, within Ac3H11_1112at 55.055 kb on + strand, within Ac3H11_1112at 55.056 kb on - strand, within Ac3H11_1112at 55.070 kb on + strand, within Ac3H11_1112at 55.070 kb on + strand, within Ac3H11_1112at 55.070 kb on + strand, within Ac3H11_1112at 55.070 kb on + strand, within Ac3H11_1112at 55.071 kb on - strand, within Ac3H11_1112at 55.071 kb on - strand, within Ac3H11_1112at 55.071 kb on - strand, within Ac3H11_1112at 55.071 kb on - strand, within Ac3H11_1112at 55.082 kb on + strand, within Ac3H11_1112at 55.082 kb on + strand, within Ac3H11_1112at 55.082 kb on + strand, within Ac3H11_1112at 55.082 kb on + strand, within Ac3H11_1112at 55.082 kb on + strand, within Ac3H11_1112at 55.082 kb on + strand, within Ac3H11_1112at 55.082 kb on + strand, within Ac3H11_1112at 55.083 kb on - strand, within Ac3H11_1112at 55.083 kb on - strand, within Ac3H11_1112at 55.083 kb on - strand, within Ac3H11_1112at 55.083 kb on - strand, within Ac3H11_1112at 55.083 kb on - strand, within Ac3H11_1112at 55.083 kb on - strand, within Ac3H11_1112at 55.083 kb on - strand, within Ac3H11_1112at 55.083 kb on - strand, within Ac3H11_1112at 55.083 kb on - strand, within Ac3H11_1112at 55.083 kb on - strand, within Ac3H11_1112at 55.083 kb on - strand, within Ac3H11_1112at 55.083 kb on - strand, within Ac3H11_1112at 55.432 kb on + strand, within Ac3H11_1112at 55.432 kb on + strand, within Ac3H11_1112at 55.432 kb on + strand, within Ac3H11_1112at 55.433 kb on - strand, within Ac3H11_1112at 55.445 kb on + strand, within Ac3H11_1112at 55.445 kb on + strand, within Ac3H11_1112at 55.446 kb on - strand, within Ac3H11_1112at 55.446 kb on - strand, within Ac3H11_1112at 55.448 kb on + strand, within Ac3H11_1112at 55.448 kb on + strand, within Ac3H11_1112at 55.448 kb on + strand, within Ac3H11_1112at 55.448 kb on + strand, within Ac3H11_1112at 55.448 kb on + strand, within Ac3H11_1112at 55.448 kb on + strand, within Ac3H11_1112at 55.448 kb on + strand, within Ac3H11_1112at 55.449 kb on - strand, within Ac3H11_1112at 55.449 kb on - strand, within Ac3H11_1112at 55.449 kb on - strand, within Ac3H11_1112at 55.449 kb on - strand, within Ac3H11_1112at 55.449 kb on - strand, within Ac3H11_1112at 55.449 kb on - strand, within Ac3H11_1112at 55.449 kb on - strand, within Ac3H11_1112at 55.449 kb on - strand, within Ac3H11_1112at 55.449 kb on - strand, within Ac3H11_1112at 55.449 kb on - strand, within Ac3H11_1112

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 35 mM
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52,570 + +0.1
52,570 + -2.0
52,570 + -0.2
52,571 - +1.1
52,571 - +0.1
52,571 - +1.4
52,571 - +1.3
52,861 + Ac3H11_1110 0.38 +1.1
52,861 + Ac3H11_1110 0.38 -0.0
52,861 + Ac3H11_1110 0.38 +1.1
52,861 + Ac3H11_1110 0.38 +0.8
52,861 + Ac3H11_1110 0.38 +1.0
52,861 + Ac3H11_1110 0.38 +0.1
52,861 + Ac3H11_1110 0.38 +1.5
52,861 + Ac3H11_1110 0.38 -0.4
52,861 + Ac3H11_1110 0.38 +1.0
52,862 - Ac3H11_1110 0.38 +0.6
52,862 - Ac3H11_1110 0.38 +0.5
52,862 - Ac3H11_1110 0.38 +0.3
52,862 - Ac3H11_1110 0.38 +1.4
52,862 - Ac3H11_1110 0.38 +0.1
52,862 - Ac3H11_1110 0.38 -1.6
52,862 - Ac3H11_1110 0.38 +1.0
52,885 + Ac3H11_1110 0.41 +1.6
52,894 + Ac3H11_1110 0.41 +0.7
52,894 + Ac3H11_1110 0.41 +1.0
52,894 + Ac3H11_1110 0.41 -1.0
52,894 + Ac3H11_1110 0.41 +1.0
52,894 + Ac3H11_1110 0.41 -0.9
52,894 + Ac3H11_1110 0.41 -0.0
52,894 + Ac3H11_1110 0.41 +1.1
52,894 + Ac3H11_1110 0.41 +0.5
52,894 + Ac3H11_1110 0.41 -0.3
52,895 - Ac3H11_1110 0.42 +0.9
52,895 - Ac3H11_1110 0.42 +0.6
52,895 - Ac3H11_1110 0.42 +0.8
52,895 - Ac3H11_1110 0.42 +0.7
52,895 - Ac3H11_1110 0.42 -0.5
52,921 + Ac3H11_1110 0.44 +0.8
52,922 - Ac3H11_1110 0.44 +1.1
52,922 - Ac3H11_1110 0.44 +0.9
53,107 + Ac3H11_1110 0.63 +0.9
53,107 + Ac3H11_1110 0.63 +1.1
53,221 + Ac3H11_1110 0.74 +0.3
53,221 + Ac3H11_1110 0.74 +0.4
53,221 + Ac3H11_1110 0.74 -0.6
53,221 + Ac3H11_1110 0.74 +0.6
53,221 + Ac3H11_1110 0.74 +0.9
53,221 + Ac3H11_1110 0.74 +0.8
53,222 - Ac3H11_1110 0.74 +0.3
53,222 - Ac3H11_1110 0.74 +0.4
53,222 - Ac3H11_1110 0.74 +2.0
53,222 - Ac3H11_1110 0.74 +0.4
53,222 - Ac3H11_1110 0.74 +1.2
53,222 - Ac3H11_1110 0.74 +0.9
53,222 - Ac3H11_1110 0.74 +1.4
53,323 + Ac3H11_1110 0.84 +1.1
53,323 + Ac3H11_1110 0.84 +0.9
53,323 + Ac3H11_1110 0.84 +1.0
53,323 + Ac3H11_1110 0.84 +0.0
53,324 - Ac3H11_1110 0.84 +0.7
53,434 + -0.4
53,468 + +1.1
53,469 - +0.8
53,469 - +0.5
53,502 + +1.4
53,502 + +0.6
53,502 + -0.3
53,502 + +0.3
53,502 + +1.1
53,503 - +1.6
53,503 - -0.1
53,563 - -0.6
53,572 + +0.4
53,573 - +1.3
53,573 - +0.8
53,827 + Ac3H11_1111 0.29 +0.8
53,827 + Ac3H11_1111 0.29 -0.8
53,827 + Ac3H11_1111 0.29 +0.2
53,828 - Ac3H11_1111 0.29 +0.0
53,890 + Ac3H11_1111 0.36 +1.2
53,890 + Ac3H11_1111 0.36 +1.4
53,890 + Ac3H11_1111 0.36 -0.2
53,890 + Ac3H11_1111 0.36 +1.3
53,890 + Ac3H11_1111 0.36 +3.2
53,890 + Ac3H11_1111 0.36 -0.1
53,890 + Ac3H11_1111 0.36 -0.0
53,890 + Ac3H11_1111 0.36 +1.0
53,890 + Ac3H11_1111 0.36 -1.4
53,890 + Ac3H11_1111 0.36 -0.7
53,890 + Ac3H11_1111 0.36 +0.4
53,890 + Ac3H11_1111 0.36 +0.2
53,890 + Ac3H11_1111 0.36 -1.1
53,890 + Ac3H11_1111 0.36 +1.6
53,891 - Ac3H11_1111 0.36 -0.9
53,891 - Ac3H11_1111 0.36 +1.0
53,891 - Ac3H11_1111 0.36 +1.0
53,891 - Ac3H11_1111 0.36 +0.4
53,891 - Ac3H11_1111 0.36 +0.4
53,891 - Ac3H11_1111 0.36 +1.4
53,891 - Ac3H11_1111 0.36 -0.2
53,891 - Ac3H11_1111 0.36 +1.0
53,891 - Ac3H11_1111 0.36 +0.4
53,891 - Ac3H11_1111 0.36 -0.2
53,923 + Ac3H11_1111 0.39 -0.0
53,923 + Ac3H11_1111 0.39 +0.9
53,923 + Ac3H11_1111 0.39 +0.9
53,923 + Ac3H11_1111 0.39 +0.5
53,924 - Ac3H11_1111 0.39 +0.6
53,924 - Ac3H11_1111 0.39 +0.9
54,035 - Ac3H11_1111 0.51 +1.3
54,172 + Ac3H11_1111 0.66 +1.6
54,172 + Ac3H11_1111 0.66 -1.0
54,172 + Ac3H11_1111 0.66 +0.4
54,172 + Ac3H11_1111 0.66 +0.7
54,172 + Ac3H11_1111 0.66 -0.2
54,172 + Ac3H11_1111 0.66 +1.4
54,172 + Ac3H11_1111 0.66 +1.0
54,172 + Ac3H11_1111 0.66 +1.0
54,172 + Ac3H11_1111 0.66 +0.7
54,173 - Ac3H11_1111 0.66 +1.2
54,173 - Ac3H11_1111 0.66 +0.6
54,173 - Ac3H11_1111 0.66 +0.3
54,173 - Ac3H11_1111 0.66 -0.5
54,173 - Ac3H11_1111 0.66 +1.0
54,173 - Ac3H11_1111 0.66 +0.2
54,173 - Ac3H11_1111 0.66 +0.3
54,173 - Ac3H11_1111 0.66 +0.2
54,173 - Ac3H11_1111 0.66 +0.6
54,173 - Ac3H11_1111 0.66 +0.0
54,173 - Ac3H11_1111 0.66 +2.7
54,187 + Ac3H11_1111 0.68 -1.0
54,188 - Ac3H11_1111 0.68 +0.6
54,292 + Ac3H11_1111 0.79 +0.0
54,292 + Ac3H11_1111 0.79 +0.8
54,292 + Ac3H11_1111 0.79 -1.0
54,292 + Ac3H11_1111 0.79 -0.8
54,292 + Ac3H11_1111 0.79 -0.1
54,293 - Ac3H11_1111 0.79 +0.5
54,293 - Ac3H11_1111 0.79 +0.2
54,293 - Ac3H11_1111 0.79 +1.3
54,293 - Ac3H11_1111 0.79 +0.0
54,379 + Ac3H11_1111 0.89 +0.8
54,379 + Ac3H11_1111 0.89 +0.2
54,380 - Ac3H11_1111 0.89 +0.8
54,411 - +1.2
54,470 - -1.3
54,522 - -0.2
54,533 + +0.1
54,533 + -2.1
54,534 - +0.7
54,534 - +0.1
54,569 + -1.2
54,569 + +1.3
54,569 + +0.5
54,569 + -0.4
54,570 - -0.4
54,570 - -0.2
54,580 + -0.1
54,580 + +0.8
54,770 + Ac3H11_1112 0.15 -0.2
54,770 + Ac3H11_1112 0.15 +0.9
54,770 + Ac3H11_1112 0.15 +0.3
54,962 + Ac3H11_1112 0.32 +0.0
54,963 - Ac3H11_1112 0.32 +0.9
54,963 - Ac3H11_1112 0.32 +1.7
55,029 - Ac3H11_1112 0.37 -1.3
55,029 - Ac3H11_1112 0.37 +0.8
55,055 + Ac3H11_1112 0.40 -1.8
55,055 + Ac3H11_1112 0.40 -0.4
55,055 + Ac3H11_1112 0.40 +0.3
55,056 - Ac3H11_1112 0.40 -0.8
55,070 + Ac3H11_1112 0.41 +0.5
55,070 + Ac3H11_1112 0.41 +2.0
55,070 + Ac3H11_1112 0.41 -1.2
55,070 + Ac3H11_1112 0.41 -0.1
55,071 - Ac3H11_1112 0.41 +0.2
55,071 - Ac3H11_1112 0.41 -0.0
55,071 - Ac3H11_1112 0.41 +0.8
55,071 - Ac3H11_1112 0.41 +1.1
55,082 + Ac3H11_1112 0.42 +0.1
55,082 + Ac3H11_1112 0.42 +0.9
55,082 + Ac3H11_1112 0.42 +0.8
55,082 + Ac3H11_1112 0.42 -0.7
55,082 + Ac3H11_1112 0.42 +0.4
55,082 + Ac3H11_1112 0.42 -0.7
55,082 + Ac3H11_1112 0.42 +0.7
55,083 - Ac3H11_1112 0.42 +1.0
55,083 - Ac3H11_1112 0.42 +0.4
55,083 - Ac3H11_1112 0.42 -1.4
55,083 - Ac3H11_1112 0.42 +0.9
55,083 - Ac3H11_1112 0.42 +0.5
55,083 - Ac3H11_1112 0.42 -0.8
55,083 - Ac3H11_1112 0.42 +0.2
55,083 - Ac3H11_1112 0.42 +0.6
55,083 - Ac3H11_1112 0.42 +1.0
55,083 - Ac3H11_1112 0.42 +0.7
55,083 - Ac3H11_1112 0.42 +0.2
55,083 - Ac3H11_1112 0.42 -0.2
55,432 + Ac3H11_1112 0.72 +0.2
55,432 + Ac3H11_1112 0.72 +2.3
55,432 + Ac3H11_1112 0.72 +0.5
55,433 - Ac3H11_1112 0.72 -1.2
55,445 + Ac3H11_1112 0.73 +0.6
55,445 + Ac3H11_1112 0.73 +0.1
55,446 - Ac3H11_1112 0.73 +0.1
55,446 - Ac3H11_1112 0.73 -0.1
55,448 + Ac3H11_1112 0.73 -0.0
55,448 + Ac3H11_1112 0.73 -0.2
55,448 + Ac3H11_1112 0.73 -0.4
55,448 + Ac3H11_1112 0.73 -0.1
55,448 + Ac3H11_1112 0.73 +1.0
55,448 + Ac3H11_1112 0.73 +0.1
55,448 + Ac3H11_1112 0.73 +0.2
55,449 - Ac3H11_1112 0.73 +0.2
55,449 - Ac3H11_1112 0.73 +0.3
55,449 - Ac3H11_1112 0.73 -0.1
55,449 - Ac3H11_1112 0.73 -0.3
55,449 - Ac3H11_1112 0.73 -0.3
55,449 - Ac3H11_1112 0.73 +0.1
55,449 - Ac3H11_1112 0.73 -1.2
55,449 - Ac3H11_1112 0.73 +0.2
55,449 - Ac3H11_1112 0.73 +0.6
55,449 - Ac3H11_1112 0.73 -1.4

Or see this region's nucleotide sequence