Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS33820 and AZOBR_RS33825 are separated by 190 nucleotides AZOBR_RS33825 and AZOBR_RS33830 are separated by 514 nucleotides
AZOBR_RS33820: AZOBR_RS33820 - hypothetical protein, at 125,498 to 126,271
_RS33820
AZOBR_RS33825: AZOBR_RS33825 - hypothetical protein, at 126,462 to 127,604
_RS33825
AZOBR_RS33830: AZOBR_RS33830 - mannose-1-phosphate guanylyltransferase, at 128,119 to 129,564
_RS33830
Position (kb) 126
127
128 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 125.579 kb on + strand, within AZOBR_RS33820 at 125.579 kb on + strand, within AZOBR_RS33820 at 125.579 kb on + strand, within AZOBR_RS33820 at 125.579 kb on + strand, within AZOBR_RS33820 at 125.579 kb on + strand, within AZOBR_RS33820 at 125.580 kb on - strand, within AZOBR_RS33820 at 125.580 kb on - strand, within AZOBR_RS33820 at 125.633 kb on + strand, within AZOBR_RS33820 at 125.634 kb on - strand, within AZOBR_RS33820 at 125.846 kb on + strand, within AZOBR_RS33820 at 125.846 kb on + strand, within AZOBR_RS33820 at 125.846 kb on + strand, within AZOBR_RS33820 at 125.846 kb on + strand at 125.846 kb on + strand, within AZOBR_RS33820 at 125.847 kb on - strand, within AZOBR_RS33820 at 125.847 kb on - strand, within AZOBR_RS33820 at 125.994 kb on - strand, within AZOBR_RS33820 at 125.994 kb on - strand, within AZOBR_RS33820 at 125.994 kb on - strand, within AZOBR_RS33820 at 126.239 kb on + strand at 126.239 kb on + strand at 126.350 kb on + strand at 127.119 kb on - strand, within AZOBR_RS33825 at 127.119 kb on - strand, within AZOBR_RS33825 at 127.129 kb on - strand, within AZOBR_RS33825 at 127.129 kb on - strand, within AZOBR_RS33825 at 127.246 kb on + strand at 127.246 kb on + strand, within AZOBR_RS33825 at 127.247 kb on - strand, within AZOBR_RS33825 at 127.247 kb on - strand, within AZOBR_RS33825 at 127.247 kb on - strand, within AZOBR_RS33825 at 127.416 kb on + strand, within AZOBR_RS33825 at 127.416 kb on + strand, within AZOBR_RS33825 at 127.666 kb on - strand at 127.824 kb on + strand at 128.042 kb on + strand at 128.042 kb on + strand at 128.043 kb on - strand at 128.073 kb on - strand at 128.124 kb on + strand at 128.602 kb on + strand, within AZOBR_RS33830 at 128.603 kb on - strand, within AZOBR_RS33830 at 128.603 kb on - strand, within AZOBR_RS33830
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 125,579 + AZOBR_RS33820 0.10 -2.2 125,579 + AZOBR_RS33820 0.10 -2.5 125,579 + AZOBR_RS33820 0.10 -3.0 125,579 + AZOBR_RS33820 0.10 -2.8 125,579 + AZOBR_RS33820 0.10 -0.1 125,580 - AZOBR_RS33820 0.11 -0.2 125,580 - AZOBR_RS33820 0.11 -2.1 125,633 + AZOBR_RS33820 0.17 -0.7 125,634 - AZOBR_RS33820 0.18 -2.1 125,846 + AZOBR_RS33820 0.45 -1.6 125,846 + AZOBR_RS33820 0.45 -2.2 125,846 + AZOBR_RS33820 0.45 -0.2 125,846 + -0.4 125,846 + AZOBR_RS33820 0.45 -1.0 125,847 - AZOBR_RS33820 0.45 -0.8 125,847 - AZOBR_RS33820 0.45 -1.3 125,994 - AZOBR_RS33820 0.64 -1.7 125,994 - AZOBR_RS33820 0.64 -1.8 125,994 - AZOBR_RS33820 0.64 -0.4 126,239 + -0.6 126,239 + -0.4 126,350 + +0.7 127,119 - AZOBR_RS33825 0.57 -0.0 127,119 - AZOBR_RS33825 0.57 -0.4 127,129 - AZOBR_RS33825 0.58 +0.5 127,129 - AZOBR_RS33825 0.58 -0.5 127,246 + +0.9 127,246 + AZOBR_RS33825 0.69 -2.0 127,247 - AZOBR_RS33825 0.69 -2.4 127,247 - AZOBR_RS33825 0.69 -1.6 127,247 - AZOBR_RS33825 0.69 -0.8 127,416 + AZOBR_RS33825 0.83 -0.5 127,416 + AZOBR_RS33825 0.83 -0.1 127,666 - +1.2 127,824 + -0.4 128,042 + +0.5 128,042 + +0.9 128,043 - -2.3 128,073 - -2.1 128,124 + +0.2 128,602 + AZOBR_RS33830 0.33 -2.1 128,603 - AZOBR_RS33830 0.33 -0.7 128,603 - AZOBR_RS33830 0.33 -2.7
Or see this region's nucleotide sequence