Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS33145 and AZOBR_RS33150 overlap by 4 nucleotides AZOBR_RS33150 and AZOBR_RS33155 are separated by 5 nucleotides AZOBR_RS33155 and AZOBR_RS33160 are separated by 167 nucleotides AZOBR_RS33160 and AZOBR_RS33165 are separated by 100 nucleotides
AZOBR_RS33145: AZOBR_RS33145 - hypothetical protein, at 122,411 to 124,936
_RS33145
AZOBR_RS33150: AZOBR_RS33150 - hypothetical protein, at 124,933 to 125,268
_RS33150
AZOBR_RS33155: AZOBR_RS33155 - membrane protein of unknown function, at 125,274 to 125,594
_RS33155
AZOBR_RS33160: AZOBR_RS33160 - hypothetical protein, at 125,762 to 126,072
_RS33160
AZOBR_RS33165: AZOBR_RS33165 - hypothetical protein, at 126,173 to 128,331
_RS33165
Position (kb) 125
126 Strain fitness (log2 ratio) -1
0
1 at 124.531 kb on + strand, within AZOBR_RS33145 at 124.761 kb on + strand at 124.762 kb on - strand at 124.948 kb on + strand at 124.948 kb on + strand at 124.949 kb on - strand at 124.949 kb on - strand at 125.234 kb on + strand, within AZOBR_RS33150 at 125.234 kb on + strand, within AZOBR_RS33150 at 125.291 kb on - strand at 125.291 kb on - strand at 125.338 kb on + strand, within AZOBR_RS33155 at 125.338 kb on + strand, within AZOBR_RS33155 at 125.422 kb on + strand, within AZOBR_RS33155 at 125.422 kb on + strand, within AZOBR_RS33155 at 125.423 kb on - strand, within AZOBR_RS33155 at 126.373 kb on + strand at 126.548 kb on - strand, within AZOBR_RS33165 at 126.589 kb on + strand, within AZOBR_RS33165
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 124,531 + AZOBR_RS33145 0.84 +0.3 124,761 + +0.2 124,762 - +0.1 124,948 + +0.7 124,948 + +0.1 124,949 - -0.2 124,949 - -0.2 125,234 + AZOBR_RS33150 0.90 +0.4 125,234 + AZOBR_RS33150 0.90 +0.3 125,291 - -0.1 125,291 - +0.4 125,338 + AZOBR_RS33155 0.20 +0.7 125,338 + AZOBR_RS33155 0.20 +0.4 125,422 + AZOBR_RS33155 0.46 +0.3 125,422 + AZOBR_RS33155 0.46 +0.7 125,423 - AZOBR_RS33155 0.46 +0.9 126,373 + +0.4 126,548 - AZOBR_RS33165 0.17 +0.4 126,589 + AZOBR_RS33165 0.19 +0.4
Or see this region's nucleotide sequence