Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS12000 and AZOBR_RS12005 are separated by 30 nucleotides AZOBR_RS12005 and AZOBR_RS12010 are separated by 125 nucleotides AZOBR_RS12010 and AZOBR_RS12015 are separated by 220 nucleotides
AZOBR_RS12000: AZOBR_RS12000 - hypothetical protein, at 2,523,074 to 2,523,514
_RS12000
AZOBR_RS12005: AZOBR_RS12005 - leucyl/phenylalanyl-tRNA--protein transferase, at 2,523,545 to 2,524,186
_RS12005
AZOBR_RS12010: AZOBR_RS12010 - ribonuclease T, at 2,524,312 to 2,524,965
_RS12010
AZOBR_RS12015: AZOBR_RS12015 - acetyl-CoA carboxylase biotin carboxylase subunit, at 2,525,186 to 2,526,529
_RS12015
Position (kb)
2524
2525 Strain fitness (log2 ratio)
-1
0
1
2 at 2523.904 kb on - strand, within AZOBR_RS12005 at 2524.098 kb on + strand, within AZOBR_RS12005 at 2524.098 kb on + strand, within AZOBR_RS12005 at 2524.196 kb on + strand at 2524.197 kb on + strand at 2524.197 kb on - strand at 2524.228 kb on + strand at 2524.229 kb on - strand at 2524.415 kb on - strand, within AZOBR_RS12010 at 2524.415 kb on - strand, within AZOBR_RS12010 at 2524.415 kb on - strand, within AZOBR_RS12010 at 2524.415 kb on - strand, within AZOBR_RS12010 at 2524.417 kb on + strand, within AZOBR_RS12010 at 2524.417 kb on + strand, within AZOBR_RS12010 at 2524.418 kb on - strand, within AZOBR_RS12010 at 2524.418 kb on - strand, within AZOBR_RS12010 at 2524.538 kb on - strand, within AZOBR_RS12010 at 2524.538 kb on - strand, within AZOBR_RS12010 at 2524.538 kb on - strand, within AZOBR_RS12010 at 2525.187 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 2,523,904 - AZOBR_RS12005 0.56 -0.9 2,524,098 + AZOBR_RS12005 0.86 +0.4 2,524,098 + AZOBR_RS12005 0.86 -0.5 2,524,196 + -0.2 2,524,197 + -0.4 2,524,197 - +0.6 2,524,228 + +0.7 2,524,229 - +0.7 2,524,415 - AZOBR_RS12010 0.16 +1.2 2,524,415 - AZOBR_RS12010 0.16 +1.2 2,524,415 - AZOBR_RS12010 0.16 +2.5 2,524,415 - AZOBR_RS12010 0.16 +0.8 2,524,417 + AZOBR_RS12010 0.16 +1.3 2,524,417 + AZOBR_RS12010 0.16 +0.4 2,524,418 - AZOBR_RS12010 0.16 -0.4 2,524,418 - AZOBR_RS12010 0.16 +1.2 2,524,538 - AZOBR_RS12010 0.35 +0.6 2,524,538 - AZOBR_RS12010 0.35 +0.0 2,524,538 - AZOBR_RS12010 0.35 +0.3 2,525,187 + -0.7
Or see this region's nucleotide sequence