Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27410

Experiment: Chloramphenicol 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27400 and AO353_27405 are separated by 98 nucleotidesAO353_27405 and AO353_27410 are separated by 28 nucleotides AO353_27400: AO353_27400 - hypothetical protein, at 5,986,433 to 5,986,666 _27400 AO353_27405: AO353_27405 - peptidase S24, at 5,986,765 to 5,987,412 _27405 AO353_27410: AO353_27410 - hypothetical protein, at 5,987,441 to 5,987,719 _27410 Position (kb) 5987 5988Strain fitness (log2 ratio) -2 -1 0 1at 5986.584 kb on + strand, within AO353_27400at 5986.584 kb on + strand, within AO353_27400at 5986.584 kb on + strand, within AO353_27400at 5986.584 kb on + strand, within AO353_27400at 5986.584 kb on + strand, within AO353_27400at 5986.621 kb on + strand, within AO353_27400at 5986.621 kb on + strand, within AO353_27400at 5986.673 kb on + strandat 5987.558 kb on - strand, within AO353_27410at 5987.562 kb on - strand, within AO353_27410at 5987.596 kb on - strand, within AO353_27410at 5987.642 kb on + strand, within AO353_27410at 5987.642 kb on + strand, within AO353_27410at 5987.642 kb on + strand, within AO353_27410at 5987.740 kb on - strandat 5987.740 kb on - strandat 5987.751 kb on + strandat 5987.800 kb on + strandat 5987.801 kb on - strandat 5987.809 kb on + strandat 5987.933 kb on - strandat 5988.073 kb on - strandat 5988.331 kb on - strandat 5988.410 kb on - strandat 5988.550 kb on - strandat 5988.719 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.004 mg/ml
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5,986,584 + AO353_27400 0.65 +0.5
5,986,584 + AO353_27400 0.65 +0.6
5,986,584 + AO353_27400 0.65 -0.9
5,986,584 + AO353_27400 0.65 +0.8
5,986,584 + AO353_27400 0.65 -0.5
5,986,621 + AO353_27400 0.80 -0.6
5,986,621 + AO353_27400 0.80 -0.1
5,986,673 + -0.6
5,987,558 - AO353_27410 0.42 -0.0
5,987,562 - AO353_27410 0.43 -1.1
5,987,596 - AO353_27410 0.56 -0.8
5,987,642 + AO353_27410 0.72 -0.3
5,987,642 + AO353_27410 0.72 +1.2
5,987,642 + AO353_27410 0.72 -1.7
5,987,740 - +0.9
5,987,740 - -0.5
5,987,751 + -0.9
5,987,800 + -1.1
5,987,801 - +0.7
5,987,809 + +1.2
5,987,933 - -1.1
5,988,073 - -0.3
5,988,331 - +0.7
5,988,410 - -2.2
5,988,550 - -1.8
5,988,719 - +1.0

Or see this region's nucleotide sequence