Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26845

Experiment: Chloramphenicol 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26840 and AO353_26845 are separated by 16 nucleotidesAO353_26845 and AO353_26850 are separated by 195 nucleotidesAO353_26850 and AO353_26855 are separated by 33 nucleotides AO353_26840: AO353_26840 - RND transporter, at 5,879,085 to 5,880,242 _26840 AO353_26845: AO353_26845 - acriflavine resistance protein B, at 5,880,259 to 5,883,357 _26845 AO353_26850: AO353_26850 - hypothetical protein, at 5,883,553 to 5,884,194 _26850 AO353_26855: AO353_26855 - hypothetical protein, at 5,884,228 to 5,886,504 _26855 Position (kb) 5880 5881 5882 5883 5884Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5879.499 kb on + strand, within AO353_26840at 5879.500 kb on - strand, within AO353_26840at 5879.835 kb on + strand, within AO353_26840at 5879.836 kb on - strand, within AO353_26840at 5879.991 kb on - strand, within AO353_26840at 5880.194 kb on - strandat 5880.258 kb on + strandat 5880.259 kb on - strandat 5880.313 kb on - strandat 5880.394 kb on + strandat 5880.395 kb on - strandat 5880.395 kb on - strandat 5880.395 kb on - strandat 5880.395 kb on - strandat 5880.395 kb on - strandat 5880.488 kb on - strandat 5880.725 kb on - strand, within AO353_26845at 5880.787 kb on + strand, within AO353_26845at 5880.788 kb on - strand, within AO353_26845at 5880.788 kb on - strand, within AO353_26845at 5880.788 kb on - strand, within AO353_26845at 5881.079 kb on - strand, within AO353_26845at 5881.202 kb on - strand, within AO353_26845at 5881.202 kb on - strand, within AO353_26845at 5881.223 kb on - strand, within AO353_26845at 5881.223 kb on - strand, within AO353_26845at 5881.223 kb on - strand, within AO353_26845at 5881.223 kb on - strand, within AO353_26845at 5881.279 kb on + strand, within AO353_26845at 5881.279 kb on + strand, within AO353_26845at 5881.280 kb on - strand, within AO353_26845at 5881.346 kb on - strand, within AO353_26845at 5881.346 kb on - strand, within AO353_26845at 5881.347 kb on + strand, within AO353_26845at 5881.347 kb on + strand, within AO353_26845at 5881.347 kb on + strand, within AO353_26845at 5881.347 kb on + strand, within AO353_26845at 5881.347 kb on + strand, within AO353_26845at 5881.347 kb on + strand, within AO353_26845at 5881.347 kb on + strand, within AO353_26845at 5881.347 kb on + strand, within AO353_26845at 5881.348 kb on - strand, within AO353_26845at 5881.348 kb on - strand, within AO353_26845at 5881.348 kb on - strand, within AO353_26845at 5881.430 kb on + strand, within AO353_26845at 5881.430 kb on + strand, within AO353_26845at 5881.430 kb on + strand, within AO353_26845at 5881.431 kb on - strand, within AO353_26845at 5881.431 kb on - strand, within AO353_26845at 5881.587 kb on + strand, within AO353_26845at 5881.590 kb on + strand, within AO353_26845at 5881.591 kb on - strand, within AO353_26845at 5881.591 kb on - strand, within AO353_26845at 5881.591 kb on - strand, within AO353_26845at 5881.654 kb on + strand, within AO353_26845at 5881.654 kb on + strand, within AO353_26845at 5881.831 kb on + strand, within AO353_26845at 5881.831 kb on + strand, within AO353_26845at 5881.850 kb on - strand, within AO353_26845at 5881.850 kb on - strand, within AO353_26845at 5881.885 kb on + strand, within AO353_26845at 5881.885 kb on + strand, within AO353_26845at 5881.963 kb on + strand, within AO353_26845at 5881.964 kb on - strand, within AO353_26845at 5881.964 kb on - strand, within AO353_26845at 5882.512 kb on + strand, within AO353_26845at 5882.513 kb on - strand, within AO353_26845at 5882.513 kb on - strand, within AO353_26845at 5882.513 kb on - strand, within AO353_26845at 5882.628 kb on + strand, within AO353_26845at 5882.628 kb on + strand, within AO353_26845at 5882.695 kb on + strand, within AO353_26845at 5882.915 kb on - strand, within AO353_26845at 5882.915 kb on - strand, within AO353_26845at 5883.098 kb on - strandat 5883.314 kb on + strandat 5883.314 kb on + strandat 5883.314 kb on + strandat 5883.441 kb on + strandat 5883.441 kb on + strandat 5883.442 kb on - strandat 5883.450 kb on + strandat 5883.461 kb on - strandat 5883.461 kb on - strandat 5883.521 kb on - strandat 5883.521 kb on - strandat 5883.685 kb on + strand, within AO353_26850at 5883.685 kb on + strand, within AO353_26850at 5883.685 kb on + strand, within AO353_26850at 5883.685 kb on + strand, within AO353_26850at 5883.685 kb on + strand, within AO353_26850at 5883.686 kb on - strand, within AO353_26850at 5883.686 kb on - strand, within AO353_26850at 5883.692 kb on + strand, within AO353_26850at 5883.693 kb on - strand, within AO353_26850at 5883.734 kb on + strand, within AO353_26850at 5883.734 kb on + strand, within AO353_26850at 5883.734 kb on + strand, within AO353_26850at 5883.735 kb on - strand, within AO353_26850at 5883.735 kb on - strand, within AO353_26850at 5883.735 kb on - strand, within AO353_26850at 5883.735 kb on - strand, within AO353_26850at 5883.735 kb on - strand, within AO353_26850at 5883.735 kb on - strand, within AO353_26850at 5883.776 kb on + strand, within AO353_26850at 5883.776 kb on + strand, within AO353_26850at 5883.776 kb on + strand, within AO353_26850at 5883.776 kb on + strand, within AO353_26850at 5883.792 kb on + strand, within AO353_26850at 5883.878 kb on - strand, within AO353_26850at 5883.943 kb on + strand, within AO353_26850at 5883.944 kb on - strand, within AO353_26850at 5883.944 kb on - strand, within AO353_26850at 5883.944 kb on - strand, within AO353_26850at 5884.018 kb on + strand, within AO353_26850at 5884.018 kb on + strand, within AO353_26850at 5884.018 kb on + strand, within AO353_26850at 5884.019 kb on - strand, within AO353_26850at 5884.019 kb on - strand, within AO353_26850at 5884.019 kb on - strand, within AO353_26850at 5884.019 kb on - strand, within AO353_26850at 5884.019 kb on - strand, within AO353_26850at 5884.019 kb on - strand, within AO353_26850at 5884.033 kb on + strand, within AO353_26850at 5884.033 kb on + strand, within AO353_26850at 5884.033 kb on + strand, within AO353_26850at 5884.033 kb on + strand, within AO353_26850at 5884.033 kb on + strandat 5884.034 kb on - strand, within AO353_26850at 5884.034 kb on - strand, within AO353_26850at 5884.141 kb on - strandat 5884.290 kb on + strandat 5884.290 kb on + strandat 5884.290 kb on + strandat 5884.290 kb on + strandat 5884.291 kb on - strandat 5884.291 kb on - strandat 5884.291 kb on - strandat 5884.291 kb on - strandat 5884.291 kb on - strandat 5884.292 kb on + strandat 5884.292 kb on + strandat 5884.292 kb on + strandat 5884.292 kb on + strandat 5884.292 kb on + strandat 5884.293 kb on - strandat 5884.293 kb on - strandat 5884.293 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.004 mg/ml
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5,879,499 + AO353_26840 0.36 -1.1
5,879,500 - AO353_26840 0.36 -0.5
5,879,835 + AO353_26840 0.65 -1.5
5,879,836 - AO353_26840 0.65 -1.2
5,879,991 - AO353_26840 0.78 -1.1
5,880,194 - -2.2
5,880,258 + -0.7
5,880,259 - +0.5
5,880,313 - +0.1
5,880,394 + -1.9
5,880,395 - -0.5
5,880,395 - -1.8
5,880,395 - +1.2
5,880,395 - +0.8
5,880,395 - -0.0
5,880,488 - -1.0
5,880,725 - AO353_26845 0.15 -0.0
5,880,787 + AO353_26845 0.17 -0.2
5,880,788 - AO353_26845 0.17 -0.9
5,880,788 - AO353_26845 0.17 -1.4
5,880,788 - AO353_26845 0.17 -0.8
5,881,079 - AO353_26845 0.26 +0.1
5,881,202 - AO353_26845 0.30 -0.7
5,881,202 - AO353_26845 0.30 -1.8
5,881,223 - AO353_26845 0.31 +1.0
5,881,223 - AO353_26845 0.31 -1.9
5,881,223 - AO353_26845 0.31 -1.6
5,881,223 - AO353_26845 0.31 -1.3
5,881,279 + AO353_26845 0.33 +1.2
5,881,279 + AO353_26845 0.33 -2.1
5,881,280 - AO353_26845 0.33 -1.3
5,881,346 - AO353_26845 0.35 +0.4
5,881,346 - AO353_26845 0.35 -2.3
5,881,347 + AO353_26845 0.35 -1.2
5,881,347 + AO353_26845 0.35 -2.1
5,881,347 + AO353_26845 0.35 -2.4
5,881,347 + AO353_26845 0.35 -1.9
5,881,347 + AO353_26845 0.35 -2.2
5,881,347 + AO353_26845 0.35 -0.2
5,881,347 + AO353_26845 0.35 -1.8
5,881,347 + AO353_26845 0.35 -0.8
5,881,348 - AO353_26845 0.35 -1.1
5,881,348 - AO353_26845 0.35 -0.1
5,881,348 - AO353_26845 0.35 -2.2
5,881,430 + AO353_26845 0.38 +0.2
5,881,430 + AO353_26845 0.38 -1.1
5,881,430 + AO353_26845 0.38 -0.1
5,881,431 - AO353_26845 0.38 -1.7
5,881,431 - AO353_26845 0.38 -1.3
5,881,587 + AO353_26845 0.43 -1.2
5,881,590 + AO353_26845 0.43 -0.6
5,881,591 - AO353_26845 0.43 -0.7
5,881,591 - AO353_26845 0.43 +0.1
5,881,591 - AO353_26845 0.43 -0.7
5,881,654 + AO353_26845 0.45 -1.6
5,881,654 + AO353_26845 0.45 -0.9
5,881,831 + AO353_26845 0.51 +1.0
5,881,831 + AO353_26845 0.51 +1.4
5,881,850 - AO353_26845 0.51 +0.1
5,881,850 - AO353_26845 0.51 -1.1
5,881,885 + AO353_26845 0.52 -0.8
5,881,885 + AO353_26845 0.52 -0.2
5,881,963 + AO353_26845 0.55 +0.2
5,881,964 - AO353_26845 0.55 -1.0
5,881,964 - AO353_26845 0.55 -1.0
5,882,512 + AO353_26845 0.73 -0.6
5,882,513 - AO353_26845 0.73 -1.0
5,882,513 - AO353_26845 0.73 +0.1
5,882,513 - AO353_26845 0.73 -0.4
5,882,628 + AO353_26845 0.76 -0.2
5,882,628 + AO353_26845 0.76 -0.6
5,882,695 + AO353_26845 0.79 -1.7
5,882,915 - AO353_26845 0.86 -0.0
5,882,915 - AO353_26845 0.86 -1.5
5,883,098 - -1.3
5,883,314 + +2.8
5,883,314 + +2.8
5,883,314 + -0.5
5,883,441 + -0.1
5,883,441 + +0.2
5,883,442 - +0.5
5,883,450 + -1.4
5,883,461 - +0.1
5,883,461 - -0.1
5,883,521 - +0.4
5,883,521 - -1.2
5,883,685 + AO353_26850 0.21 -0.0
5,883,685 + AO353_26850 0.21 -2.2
5,883,685 + AO353_26850 0.21 +0.9
5,883,685 + AO353_26850 0.21 -0.1
5,883,685 + AO353_26850 0.21 +1.2
5,883,686 - AO353_26850 0.21 +0.6
5,883,686 - AO353_26850 0.21 -1.4
5,883,692 + AO353_26850 0.22 +0.5
5,883,693 - AO353_26850 0.22 -2.2
5,883,734 + AO353_26850 0.28 +0.2
5,883,734 + AO353_26850 0.28 +0.3
5,883,734 + AO353_26850 0.28 +0.9
5,883,735 - AO353_26850 0.28 -0.3
5,883,735 - AO353_26850 0.28 +0.3
5,883,735 - AO353_26850 0.28 +0.3
5,883,735 - AO353_26850 0.28 -2.1
5,883,735 - AO353_26850 0.28 +0.6
5,883,735 - AO353_26850 0.28 -0.2
5,883,776 + AO353_26850 0.35 -1.9
5,883,776 + AO353_26850 0.35 -0.5
5,883,776 + AO353_26850 0.35 +0.6
5,883,776 + AO353_26850 0.35 -1.3
5,883,792 + AO353_26850 0.37 -1.4
5,883,878 - AO353_26850 0.51 -1.2
5,883,943 + AO353_26850 0.61 +1.6
5,883,944 - AO353_26850 0.61 -1.9
5,883,944 - AO353_26850 0.61 -0.1
5,883,944 - AO353_26850 0.61 +0.8
5,884,018 + AO353_26850 0.72 -0.9
5,884,018 + AO353_26850 0.72 -1.4
5,884,018 + AO353_26850 0.72 +0.4
5,884,019 - AO353_26850 0.73 -1.6
5,884,019 - AO353_26850 0.73 +0.3
5,884,019 - AO353_26850 0.73 -0.1
5,884,019 - AO353_26850 0.73 -1.6
5,884,019 - AO353_26850 0.73 -0.8
5,884,019 - AO353_26850 0.73 -0.8
5,884,033 + AO353_26850 0.75 -0.0
5,884,033 + AO353_26850 0.75 -0.7
5,884,033 + AO353_26850 0.75 -0.7
5,884,033 + AO353_26850 0.75 +1.4
5,884,033 + -0.1
5,884,034 - AO353_26850 0.75 +0.7
5,884,034 - AO353_26850 0.75 -1.6
5,884,141 - +0.7
5,884,290 + -1.4
5,884,290 + +0.4
5,884,290 + -0.4
5,884,290 + +0.1
5,884,291 - -0.4
5,884,291 - +0.2
5,884,291 - -0.4
5,884,291 - +2.4
5,884,291 - +0.1
5,884,292 + +0.2
5,884,292 + +0.3
5,884,292 + +1.2
5,884,292 + -0.5
5,884,292 + -0.4
5,884,293 - +0.8
5,884,293 - +0.6
5,884,293 - +0.6

Or see this region's nucleotide sequence