Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25750

Experiment: Chloramphenicol 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25745 and AO353_25750 are separated by 11 nucleotidesAO353_25750 and AO353_25755 overlap by 4 nucleotidesAO353_25755 and AO353_25760 overlap by 4 nucleotides AO353_25745: AO353_25745 - LysR family transcriptional regulator, at 5,677,067 to 5,677,975 _25745 AO353_25750: AO353_25750 - hypothetical protein, at 5,677,987 to 5,678,331 _25750 AO353_25755: AO353_25755 - hypothetical protein, at 5,678,328 to 5,678,732 _25755 AO353_25760: AO353_25760 - UDP pyrophosphate phosphatase, at 5,678,729 to 5,679,559 _25760 Position (kb) 5677 5678 5679Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5677.088 kb on + strandat 5677.088 kb on + strandat 5677.088 kb on + strandat 5677.089 kb on - strandat 5677.089 kb on - strandat 5677.089 kb on - strandat 5677.089 kb on - strandat 5677.089 kb on - strandat 5677.089 kb on - strandat 5677.089 kb on - strandat 5677.091 kb on + strandat 5677.585 kb on + strand, within AO353_25745at 5677.586 kb on - strand, within AO353_25745at 5677.587 kb on + strand, within AO353_25745at 5677.588 kb on - strand, within AO353_25745at 5677.799 kb on + strand, within AO353_25745at 5677.800 kb on - strand, within AO353_25745at 5677.800 kb on - strand, within AO353_25745at 5677.800 kb on - strand, within AO353_25745at 5677.800 kb on - strandat 5677.800 kb on - strand, within AO353_25745at 5677.800 kb on - strand, within AO353_25745at 5677.800 kb on - strand, within AO353_25745at 5677.800 kb on - strand, within AO353_25745at 5677.800 kb on - strand, within AO353_25745at 5677.972 kb on - strandat 5677.972 kb on - strandat 5678.044 kb on + strand, within AO353_25750at 5678.045 kb on - strand, within AO353_25750at 5678.045 kb on - strand, within AO353_25750at 5678.060 kb on + strand, within AO353_25750at 5678.060 kb on + strand, within AO353_25750at 5678.061 kb on - strand, within AO353_25750at 5678.102 kb on + strand, within AO353_25750at 5678.103 kb on - strand, within AO353_25750at 5678.191 kb on + strand, within AO353_25750at 5678.252 kb on + strand, within AO353_25750at 5678.252 kb on + strand, within AO353_25750at 5678.252 kb on + strand, within AO353_25750at 5678.252 kb on + strand, within AO353_25750at 5678.252 kb on + strand, within AO353_25750at 5678.253 kb on - strand, within AO353_25750at 5678.253 kb on - strand, within AO353_25750at 5678.253 kb on - strand, within AO353_25750at 5678.253 kb on - strand, within AO353_25750at 5678.253 kb on - strand, within AO353_25750at 5678.321 kb on + strandat 5678.321 kb on + strandat 5678.321 kb on + strandat 5678.321 kb on + strandat 5678.321 kb on + strandat 5678.329 kb on + strandat 5678.330 kb on - strandat 5678.330 kb on - strandat 5678.419 kb on + strand, within AO353_25755at 5678.420 kb on - strand, within AO353_25755at 5678.420 kb on - strand, within AO353_25755at 5678.420 kb on - strand, within AO353_25755at 5678.420 kb on - strand, within AO353_25755at 5678.519 kb on + strand, within AO353_25755at 5678.519 kb on + strand, within AO353_25755at 5678.520 kb on - strand, within AO353_25755at 5678.560 kb on + strand, within AO353_25755at 5678.560 kb on + strand, within AO353_25755at 5678.560 kb on + strand, within AO353_25755at 5678.593 kb on + strand, within AO353_25755at 5678.593 kb on + strand, within AO353_25755at 5678.593 kb on + strand, within AO353_25755at 5678.594 kb on - strand, within AO353_25755at 5678.594 kb on - strand, within AO353_25755at 5678.737 kb on + strandat 5678.737 kb on + strandat 5678.738 kb on - strandat 5678.823 kb on + strand, within AO353_25760at 5678.823 kb on + strand, within AO353_25760at 5678.823 kb on + strand, within AO353_25760at 5678.823 kb on + strand, within AO353_25760at 5678.823 kb on + strand, within AO353_25760at 5678.823 kb on + strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.877 kb on - strand, within AO353_25760at 5678.879 kb on - strand, within AO353_25760at 5678.947 kb on - strand, within AO353_25760at 5678.955 kb on + strand, within AO353_25760at 5678.956 kb on - strand, within AO353_25760at 5678.956 kb on - strand, within AO353_25760at 5679.016 kb on + strand, within AO353_25760at 5679.017 kb on - strand, within AO353_25760at 5679.237 kb on + strand, within AO353_25760at 5679.237 kb on + strand, within AO353_25760at 5679.238 kb on - strand, within AO353_25760at 5679.238 kb on - strand, within AO353_25760at 5679.238 kb on - strand, within AO353_25760at 5679.251 kb on - strand, within AO353_25760at 5679.251 kb on - strand, within AO353_25760at 5679.251 kb on - strand, within AO353_25760at 5679.251 kb on - strand, within AO353_25760at 5679.310 kb on + strand, within AO353_25760at 5679.310 kb on + strand, within AO353_25760at 5679.311 kb on - strand, within AO353_25760

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.004 mg/ml
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5,677,088 + -1.1
5,677,088 + -0.2
5,677,088 + +0.4
5,677,089 - -1.4
5,677,089 - -0.9
5,677,089 - -0.7
5,677,089 - -0.3
5,677,089 - +1.1
5,677,089 - -0.6
5,677,089 - -0.4
5,677,091 + -1.1
5,677,585 + AO353_25745 0.57 +0.3
5,677,586 - AO353_25745 0.57 +1.7
5,677,587 + AO353_25745 0.57 +0.0
5,677,588 - AO353_25745 0.57 -0.7
5,677,799 + AO353_25745 0.81 -0.9
5,677,800 - AO353_25745 0.81 -0.4
5,677,800 - AO353_25745 0.81 -0.9
5,677,800 - AO353_25745 0.81 -0.4
5,677,800 - +1.1
5,677,800 - AO353_25745 0.81 +0.1
5,677,800 - AO353_25745 0.81 +0.3
5,677,800 - AO353_25745 0.81 -1.1
5,677,800 - AO353_25745 0.81 -0.6
5,677,800 - AO353_25745 0.81 -1.0
5,677,972 - -1.4
5,677,972 - -1.9
5,678,044 + AO353_25750 0.17 -0.7
5,678,045 - AO353_25750 0.17 -1.4
5,678,045 - AO353_25750 0.17 -0.3
5,678,060 + AO353_25750 0.21 -0.7
5,678,060 + AO353_25750 0.21 +0.4
5,678,061 - AO353_25750 0.21 -0.4
5,678,102 + AO353_25750 0.33 -2.2
5,678,103 - AO353_25750 0.34 -0.1
5,678,191 + AO353_25750 0.59 -2.3
5,678,252 + AO353_25750 0.77 +0.2
5,678,252 + AO353_25750 0.77 -0.7
5,678,252 + AO353_25750 0.77 -0.4
5,678,252 + AO353_25750 0.77 -2.0
5,678,252 + AO353_25750 0.77 +0.5
5,678,253 - AO353_25750 0.77 -2.0
5,678,253 - AO353_25750 0.77 +0.3
5,678,253 - AO353_25750 0.77 -1.4
5,678,253 - AO353_25750 0.77 -1.0
5,678,253 - AO353_25750 0.77 -1.9
5,678,321 + -0.9
5,678,321 + +0.4
5,678,321 + +0.8
5,678,321 + +0.5
5,678,321 + +0.6
5,678,329 + +1.1
5,678,330 - -0.4
5,678,330 - +0.7
5,678,419 + AO353_25755 0.22 -0.1
5,678,420 - AO353_25755 0.23 +0.6
5,678,420 - AO353_25755 0.23 -1.4
5,678,420 - AO353_25755 0.23 -1.0
5,678,420 - AO353_25755 0.23 +0.6
5,678,519 + AO353_25755 0.47 -0.7
5,678,519 + AO353_25755 0.47 -0.8
5,678,520 - AO353_25755 0.47 -0.8
5,678,560 + AO353_25755 0.57 -0.3
5,678,560 + AO353_25755 0.57 +0.5
5,678,560 + AO353_25755 0.57 -0.6
5,678,593 + AO353_25755 0.65 +0.0
5,678,593 + AO353_25755 0.65 -2.9
5,678,593 + AO353_25755 0.65 -0.2
5,678,594 - AO353_25755 0.66 +1.7
5,678,594 - AO353_25755 0.66 -0.7
5,678,737 + -1.3
5,678,737 + +0.4
5,678,738 - -1.4
5,678,823 + AO353_25760 0.11 -2.4
5,678,823 + AO353_25760 0.11 -0.4
5,678,823 + AO353_25760 0.11 +0.2
5,678,823 + AO353_25760 0.11 -0.8
5,678,823 + AO353_25760 0.11 -0.4
5,678,823 + AO353_25760 0.11 -2.3
5,678,824 - AO353_25760 0.11 -0.0
5,678,824 - AO353_25760 0.11 -0.2
5,678,824 - AO353_25760 0.11 -1.1
5,678,824 - AO353_25760 0.11 +2.4
5,678,824 - AO353_25760 0.11 -0.8
5,678,824 - AO353_25760 0.11 -1.4
5,678,824 - AO353_25760 0.11 -0.6
5,678,824 - AO353_25760 0.11 -1.0
5,678,824 - AO353_25760 0.11 +0.3
5,678,824 - AO353_25760 0.11 -0.7
5,678,824 - AO353_25760 0.11 +0.6
5,678,877 - AO353_25760 0.18 +0.1
5,678,879 - AO353_25760 0.18 -0.8
5,678,947 - AO353_25760 0.26 -1.1
5,678,955 + AO353_25760 0.27 -0.3
5,678,956 - AO353_25760 0.27 +0.5
5,678,956 - AO353_25760 0.27 +0.9
5,679,016 + AO353_25760 0.35 -0.2
5,679,017 - AO353_25760 0.35 -0.4
5,679,237 + AO353_25760 0.61 +1.1
5,679,237 + AO353_25760 0.61 +0.6
5,679,238 - AO353_25760 0.61 +0.7
5,679,238 - AO353_25760 0.61 +0.3
5,679,238 - AO353_25760 0.61 +0.1
5,679,251 - AO353_25760 0.63 +0.1
5,679,251 - AO353_25760 0.63 +1.0
5,679,251 - AO353_25760 0.63 +0.1
5,679,251 - AO353_25760 0.63 -0.1
5,679,310 + AO353_25760 0.70 +1.1
5,679,310 + AO353_25760 0.70 +1.0
5,679,311 - AO353_25760 0.70 +0.9

Or see this region's nucleotide sequence