Experiment: Chloramphenicol 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_09025 and AO353_09030 are separated by 795 nucleotides AO353_09030 and AO353_09035 are separated by 421 nucleotides
AO353_09025: AO353_09025 - nucleoside diphosphate kinase regulator, at 1,982,202 to 1,982,612
_09025
AO353_09030: AO353_09030 - iron donor protein CyaY, at 1,983,408 to 1,983,740
_09030
AO353_09035: AO353_09035 - diaminopimelate decarboxylase, at 1,984,162 to 1,985,409
_09035
Position (kb)
1983
1984 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1982.666 kb on + strand at 1982.666 kb on + strand at 1982.667 kb on - strand at 1982.715 kb on - strand at 1982.715 kb on - strand at 1982.715 kb on - strand at 1982.732 kb on - strand at 1982.732 kb on - strand at 1982.733 kb on + strand at 1982.734 kb on - strand at 1983.078 kb on + strand at 1983.078 kb on + strand at 1983.078 kb on + strand at 1983.078 kb on + strand at 1983.078 kb on + strand at 1983.104 kb on + strand at 1983.104 kb on + strand at 1983.104 kb on + strand at 1983.104 kb on + strand at 1983.104 kb on + strand at 1983.104 kb on + strand at 1983.104 kb on + strand at 1983.104 kb on + strand at 1983.104 kb on + strand at 1983.104 kb on + strand at 1983.104 kb on + strand at 1983.104 kb on + strand at 1983.104 kb on + strand at 1983.104 kb on + strand at 1983.104 kb on + strand at 1983.105 kb on - strand at 1983.105 kb on - strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.108 kb on + strand at 1983.109 kb on - strand at 1983.109 kb on - strand at 1983.118 kb on - strand at 1983.118 kb on - strand at 1983.165 kb on + strand at 1983.165 kb on + strand at 1983.165 kb on + strand at 1983.165 kb on + strand at 1983.171 kb on + strand at 1983.172 kb on - strand at 1983.180 kb on + strand at 1983.180 kb on + strand at 1983.180 kb on + strand at 1983.181 kb on - strand at 1983.191 kb on + strand at 1983.192 kb on - strand at 1983.265 kb on + strand at 1983.328 kb on + strand at 1983.328 kb on + strand at 1983.328 kb on + strand at 1983.329 kb on - strand at 1983.329 kb on - strand at 1983.329 kb on - strand at 1983.329 kb on - strand at 1983.363 kb on + strand at 1983.363 kb on + strand at 1983.363 kb on + strand at 1983.363 kb on + strand at 1983.363 kb on + strand at 1983.364 kb on - strand at 1983.364 kb on - strand at 1983.364 kb on - strand at 1983.524 kb on - strand, within AO353_09030 at 1983.677 kb on + strand, within AO353_09030 at 1983.764 kb on - strand at 1983.787 kb on + strand at 1983.787 kb on + strand at 1983.840 kb on + strand at 1983.840 kb on + strand at 1983.840 kb on + strand at 1983.841 kb on - strand at 1983.841 kb on - strand at 1983.841 kb on - strand at 1983.841 kb on - strand at 1983.848 kb on - strand at 1983.916 kb on + strand at 1983.941 kb on + strand at 1983.941 kb on + strand at 1983.941 kb on + strand at 1983.941 kb on + strand at 1983.941 kb on + strand at 1984.060 kb on + strand at 1984.060 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.150 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.004 mg/ml remove 1,982,666 + -0.6 1,982,666 + +0.9 1,982,667 - -0.7 1,982,715 - +0.3 1,982,715 - -0.8 1,982,715 - -0.2 1,982,732 - -2.0 1,982,732 - -0.3 1,982,733 + +1.5 1,982,734 - -1.3 1,983,078 + -2.2 1,983,078 + -0.0 1,983,078 + +0.0 1,983,078 + +0.5 1,983,078 + +0.0 1,983,104 + -0.6 1,983,104 + +0.2 1,983,104 + +0.3 1,983,104 + +0.9 1,983,104 + +0.3 1,983,104 + -0.5 1,983,104 + +1.6 1,983,104 + -0.1 1,983,104 + -1.4 1,983,104 + +0.7 1,983,104 + -0.5 1,983,104 + +0.2 1,983,104 + -0.3 1,983,104 + -0.9 1,983,104 + +0.1 1,983,105 - +1.0 1,983,105 - +0.3 1,983,108 + +1.2 1,983,108 + -0.0 1,983,108 + -0.5 1,983,108 + +0.6 1,983,108 + -0.4 1,983,108 + +0.9 1,983,108 + -0.8 1,983,108 + +0.6 1,983,108 + -1.0 1,983,108 + +0.1 1,983,108 + +0.9 1,983,108 + +0.3 1,983,108 + +0.5 1,983,108 + -0.2 1,983,108 + -0.5 1,983,108 + -0.8 1,983,108 + -0.1 1,983,108 + -0.5 1,983,108 + +0.4 1,983,108 + -0.0 1,983,108 + -0.1 1,983,108 + +0.1 1,983,108 + -0.6 1,983,108 + +1.0 1,983,108 + +0.0 1,983,108 + -0.8 1,983,108 + +0.5 1,983,109 - +0.6 1,983,109 - +1.3 1,983,118 - +0.3 1,983,118 - -0.5 1,983,165 + -0.6 1,983,165 + +0.4 1,983,165 + -0.7 1,983,165 + +0.4 1,983,171 + +1.0 1,983,172 - +0.5 1,983,180 + -0.3 1,983,180 + -0.1 1,983,180 + +0.5 1,983,181 - +2.2 1,983,191 + -0.0 1,983,192 - +0.3 1,983,265 + +0.1 1,983,328 + +0.7 1,983,328 + +0.1 1,983,328 + -0.6 1,983,329 - +0.0 1,983,329 - -0.1 1,983,329 - +0.2 1,983,329 - +1.0 1,983,363 + +1.2 1,983,363 + -2.0 1,983,363 + +1.5 1,983,363 + +1.8 1,983,363 + -0.8 1,983,364 - -0.7 1,983,364 - -0.5 1,983,364 - +0.7 1,983,524 - AO353_09030 0.35 +0.0 1,983,677 + AO353_09030 0.81 -0.9 1,983,764 - +0.3 1,983,787 + +0.7 1,983,787 + +0.6 1,983,840 + +0.2 1,983,840 + +1.7 1,983,840 + +1.4 1,983,841 - -0.6 1,983,841 - +0.0 1,983,841 - +0.2 1,983,841 - -0.6 1,983,848 - -1.4 1,983,916 + +3.2 1,983,941 + -0.1 1,983,941 + -0.2 1,983,941 + -1.1 1,983,941 + -1.0 1,983,941 + -0.6 1,984,060 + -1.9 1,984,060 + -1.3 1,984,147 + -0.1 1,984,147 + -1.0 1,984,147 + +1.5 1,984,147 + -1.0 1,984,147 + -0.1 1,984,147 + +0.4 1,984,147 + -1.3 1,984,147 + +0.5 1,984,147 + +0.9 1,984,147 + +0.2 1,984,147 + +0.6 1,984,147 + -0.0 1,984,147 + +0.0 1,984,147 + +0.6 1,984,147 + -0.2 1,984,147 + -0.4 1,984,150 + +0.6
Or see this region's nucleotide sequence