Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09030

Experiment: Chloramphenicol 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09025 and AO353_09030 are separated by 795 nucleotidesAO353_09030 and AO353_09035 are separated by 421 nucleotides AO353_09025: AO353_09025 - nucleoside diphosphate kinase regulator, at 1,982,202 to 1,982,612 _09025 AO353_09030: AO353_09030 - iron donor protein CyaY, at 1,983,408 to 1,983,740 _09030 AO353_09035: AO353_09035 - diaminopimelate decarboxylase, at 1,984,162 to 1,985,409 _09035 Position (kb) 1983 1984Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1982.666 kb on + strandat 1982.666 kb on + strandat 1982.667 kb on - strandat 1982.715 kb on - strandat 1982.715 kb on - strandat 1982.715 kb on - strandat 1982.732 kb on - strandat 1982.732 kb on - strandat 1982.733 kb on + strandat 1982.734 kb on - strandat 1983.078 kb on + strandat 1983.078 kb on + strandat 1983.078 kb on + strandat 1983.078 kb on + strandat 1983.078 kb on + strandat 1983.104 kb on + strandat 1983.104 kb on + strandat 1983.104 kb on + strandat 1983.104 kb on + strandat 1983.104 kb on + strandat 1983.104 kb on + strandat 1983.104 kb on + strandat 1983.104 kb on + strandat 1983.104 kb on + strandat 1983.104 kb on + strandat 1983.104 kb on + strandat 1983.104 kb on + strandat 1983.104 kb on + strandat 1983.104 kb on + strandat 1983.104 kb on + strandat 1983.105 kb on - strandat 1983.105 kb on - strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.108 kb on + strandat 1983.109 kb on - strandat 1983.109 kb on - strandat 1983.118 kb on - strandat 1983.118 kb on - strandat 1983.165 kb on + strandat 1983.165 kb on + strandat 1983.165 kb on + strandat 1983.165 kb on + strandat 1983.171 kb on + strandat 1983.172 kb on - strandat 1983.180 kb on + strandat 1983.180 kb on + strandat 1983.180 kb on + strandat 1983.181 kb on - strandat 1983.191 kb on + strandat 1983.192 kb on - strandat 1983.265 kb on + strandat 1983.328 kb on + strandat 1983.328 kb on + strandat 1983.328 kb on + strandat 1983.329 kb on - strandat 1983.329 kb on - strandat 1983.329 kb on - strandat 1983.329 kb on - strandat 1983.363 kb on + strandat 1983.363 kb on + strandat 1983.363 kb on + strandat 1983.363 kb on + strandat 1983.363 kb on + strandat 1983.364 kb on - strandat 1983.364 kb on - strandat 1983.364 kb on - strandat 1983.524 kb on - strand, within AO353_09030at 1983.677 kb on + strand, within AO353_09030at 1983.764 kb on - strandat 1983.787 kb on + strandat 1983.787 kb on + strandat 1983.840 kb on + strandat 1983.840 kb on + strandat 1983.840 kb on + strandat 1983.841 kb on - strandat 1983.841 kb on - strandat 1983.841 kb on - strandat 1983.841 kb on - strandat 1983.848 kb on - strandat 1983.916 kb on + strandat 1983.941 kb on + strandat 1983.941 kb on + strandat 1983.941 kb on + strandat 1983.941 kb on + strandat 1983.941 kb on + strandat 1984.060 kb on + strandat 1984.060 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.150 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.004 mg/ml
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1,982,666 + -0.6
1,982,666 + +0.9
1,982,667 - -0.7
1,982,715 - +0.3
1,982,715 - -0.8
1,982,715 - -0.2
1,982,732 - -2.0
1,982,732 - -0.3
1,982,733 + +1.5
1,982,734 - -1.3
1,983,078 + -2.2
1,983,078 + -0.0
1,983,078 + +0.0
1,983,078 + +0.5
1,983,078 + +0.0
1,983,104 + -0.6
1,983,104 + +0.2
1,983,104 + +0.3
1,983,104 + +0.9
1,983,104 + +0.3
1,983,104 + -0.5
1,983,104 + +1.6
1,983,104 + -0.1
1,983,104 + -1.4
1,983,104 + +0.7
1,983,104 + -0.5
1,983,104 + +0.2
1,983,104 + -0.3
1,983,104 + -0.9
1,983,104 + +0.1
1,983,105 - +1.0
1,983,105 - +0.3
1,983,108 + +1.2
1,983,108 + -0.0
1,983,108 + -0.5
1,983,108 + +0.6
1,983,108 + -0.4
1,983,108 + +0.9
1,983,108 + -0.8
1,983,108 + +0.6
1,983,108 + -1.0
1,983,108 + +0.1
1,983,108 + +0.9
1,983,108 + +0.3
1,983,108 + +0.5
1,983,108 + -0.2
1,983,108 + -0.5
1,983,108 + -0.8
1,983,108 + -0.1
1,983,108 + -0.5
1,983,108 + +0.4
1,983,108 + -0.0
1,983,108 + -0.1
1,983,108 + +0.1
1,983,108 + -0.6
1,983,108 + +1.0
1,983,108 + +0.0
1,983,108 + -0.8
1,983,108 + +0.5
1,983,109 - +0.6
1,983,109 - +1.3
1,983,118 - +0.3
1,983,118 - -0.5
1,983,165 + -0.6
1,983,165 + +0.4
1,983,165 + -0.7
1,983,165 + +0.4
1,983,171 + +1.0
1,983,172 - +0.5
1,983,180 + -0.3
1,983,180 + -0.1
1,983,180 + +0.5
1,983,181 - +2.2
1,983,191 + -0.0
1,983,192 - +0.3
1,983,265 + +0.1
1,983,328 + +0.7
1,983,328 + +0.1
1,983,328 + -0.6
1,983,329 - +0.0
1,983,329 - -0.1
1,983,329 - +0.2
1,983,329 - +1.0
1,983,363 + +1.2
1,983,363 + -2.0
1,983,363 + +1.5
1,983,363 + +1.8
1,983,363 + -0.8
1,983,364 - -0.7
1,983,364 - -0.5
1,983,364 - +0.7
1,983,524 - AO353_09030 0.35 +0.0
1,983,677 + AO353_09030 0.81 -0.9
1,983,764 - +0.3
1,983,787 + +0.7
1,983,787 + +0.6
1,983,840 + +0.2
1,983,840 + +1.7
1,983,840 + +1.4
1,983,841 - -0.6
1,983,841 - +0.0
1,983,841 - +0.2
1,983,841 - -0.6
1,983,848 - -1.4
1,983,916 + +3.2
1,983,941 + -0.1
1,983,941 + -0.2
1,983,941 + -1.1
1,983,941 + -1.0
1,983,941 + -0.6
1,984,060 + -1.9
1,984,060 + -1.3
1,984,147 + -0.1
1,984,147 + -1.0
1,984,147 + +1.5
1,984,147 + -1.0
1,984,147 + -0.1
1,984,147 + +0.4
1,984,147 + -1.3
1,984,147 + +0.5
1,984,147 + +0.9
1,984,147 + +0.2
1,984,147 + +0.6
1,984,147 + -0.0
1,984,147 + +0.0
1,984,147 + +0.6
1,984,147 + -0.2
1,984,147 + -0.4
1,984,150 + +0.6

Or see this region's nucleotide sequence