Experiment: Chloramphenicol 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03570 and AO353_03575 overlap by 11 nucleotides AO353_03575 and AO353_03580 are separated by 139 nucleotides AO353_03580 and AO353_03585 are separated by 0 nucleotides AO353_03585 and AO353_03590 are separated by 118 nucleotides
AO353_03570: AO353_03570 - protein TolQ, at 763,580 to 764,275
_03570
AO353_03575: AO353_03575 - 4-hydroxybenzoyl-CoA thioesterase, at 764,265 to 764,732
_03575
AO353_03580: AO353_03580 - ATP-dependent DNA helicase RuvB, at 764,872 to 765,933
_03580
AO353_03585: AO353_03585 - ATP-dependent DNA helicase RuvA, at 765,934 to 766,542
_03585
AO353_03590: AO353_03590 - crossover junction endodeoxyribonuclease RuvC, at 766,661 to 767,185
_03590
Position (kb) 764
765
766 Strain fitness (log2 ratio) -2
-1
0
1
2 at 764.334 kb on + strand, within AO353_03575 at 764.335 kb on - strand, within AO353_03575 at 764.335 kb on - strand, within AO353_03575 at 764.335 kb on - strand, within AO353_03575 at 764.335 kb on - strand, within AO353_03575 at 764.367 kb on - strand, within AO353_03575 at 764.367 kb on - strand, within AO353_03575 at 764.367 kb on - strand, within AO353_03575 at 764.367 kb on - strand, within AO353_03575 at 764.367 kb on - strand, within AO353_03575 at 764.367 kb on - strand, within AO353_03575 at 764.445 kb on - strand, within AO353_03575 at 764.476 kb on - strand, within AO353_03575 at 764.476 kb on - strand, within AO353_03575 at 764.476 kb on - strand, within AO353_03575 at 764.476 kb on - strand, within AO353_03575 at 764.488 kb on - strand, within AO353_03575 at 764.488 kb on - strand, within AO353_03575 at 764.525 kb on - strand, within AO353_03575 at 764.628 kb on - strand, within AO353_03575 at 764.634 kb on - strand, within AO353_03575 at 764.634 kb on - strand, within AO353_03575 at 764.639 kb on - strand, within AO353_03575 at 764.639 kb on - strand, within AO353_03575 at 764.639 kb on - strand, within AO353_03575 at 764.639 kb on - strand, within AO353_03575 at 764.643 kb on - strand, within AO353_03575 at 764.643 kb on - strand, within AO353_03575 at 764.648 kb on - strand, within AO353_03575 at 764.648 kb on - strand, within AO353_03575 at 764.651 kb on - strand, within AO353_03575 at 764.651 kb on - strand, within AO353_03575 at 764.651 kb on - strand, within AO353_03575 at 764.651 kb on - strand, within AO353_03575 at 764.681 kb on - strand, within AO353_03575 at 764.681 kb on - strand, within AO353_03575 at 764.684 kb on - strand, within AO353_03575 at 764.684 kb on - strand, within AO353_03575 at 764.684 kb on - strand, within AO353_03575 at 764.733 kb on - strand at 764.733 kb on - strand at 764.733 kb on - strand at 764.733 kb on - strand at 764.733 kb on - strand at 764.733 kb on - strand at 764.738 kb on - strand at 764.738 kb on - strand at 764.745 kb on - strand at 764.831 kb on - strand at 764.851 kb on + strand at 764.852 kb on - strand at 764.852 kb on - strand at 764.882 kb on - strand at 764.921 kb on - strand at 764.954 kb on + strand at 764.954 kb on + strand at 764.955 kb on - strand at 764.955 kb on - strand at 764.997 kb on + strand, within AO353_03580 at 764.999 kb on + strand, within AO353_03580 at 764.999 kb on + strand, within AO353_03580 at 765.198 kb on + strand, within AO353_03580 at 765.198 kb on + strand, within AO353_03580 at 765.199 kb on - strand, within AO353_03580 at 765.205 kb on - strand, within AO353_03580 at 765.205 kb on - strand, within AO353_03580 at 765.274 kb on - strand, within AO353_03580 at 765.376 kb on - strand, within AO353_03580 at 765.548 kb on + strand, within AO353_03580 at 765.836 kb on + strand at 765.837 kb on - strand at 765.935 kb on + strand at 765.936 kb on - strand at 765.936 kb on - strand at 766.480 kb on + strand, within AO353_03585 at 766.480 kb on + strand, within AO353_03585 at 766.480 kb on + strand, within AO353_03585 at 766.480 kb on + strand, within AO353_03585 at 766.481 kb on - strand, within AO353_03585 at 766.481 kb on - strand, within AO353_03585 at 766.481 kb on - strand, within AO353_03585 at 766.583 kb on + strand at 766.654 kb on + strand at 766.654 kb on + strand at 766.654 kb on + strand at 766.655 kb on - strand at 766.831 kb on + strand, within AO353_03590 at 766.882 kb on - strand, within AO353_03590 at 766.882 kb on - strand, within AO353_03590
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.004 mg/ml remove 764,334 + AO353_03575 0.15 +1.2 764,335 - AO353_03575 0.15 -0.7 764,335 - AO353_03575 0.15 +0.4 764,335 - AO353_03575 0.15 +1.2 764,335 - AO353_03575 0.15 +1.7 764,367 - AO353_03575 0.22 -0.3 764,367 - AO353_03575 0.22 -0.2 764,367 - AO353_03575 0.22 -0.6 764,367 - AO353_03575 0.22 +1.0 764,367 - AO353_03575 0.22 +1.3 764,367 - AO353_03575 0.22 +0.2 764,445 - AO353_03575 0.38 -0.2 764,476 - AO353_03575 0.45 +0.7 764,476 - AO353_03575 0.45 +0.7 764,476 - AO353_03575 0.45 +0.8 764,476 - AO353_03575 0.45 -0.5 764,488 - AO353_03575 0.48 +0.3 764,488 - AO353_03575 0.48 +0.2 764,525 - AO353_03575 0.56 -0.3 764,628 - AO353_03575 0.78 +1.9 764,634 - AO353_03575 0.79 +0.3 764,634 - AO353_03575 0.79 -0.7 764,639 - AO353_03575 0.80 +2.0 764,639 - AO353_03575 0.80 +0.3 764,639 - AO353_03575 0.80 -1.8 764,639 - AO353_03575 0.80 +1.5 764,643 - AO353_03575 0.81 -1.0 764,643 - AO353_03575 0.81 -1.3 764,648 - AO353_03575 0.82 +2.7 764,648 - AO353_03575 0.82 +0.7 764,651 - AO353_03575 0.82 +0.6 764,651 - AO353_03575 0.82 -0.5 764,651 - AO353_03575 0.82 +0.2 764,651 - AO353_03575 0.82 -2.1 764,681 - AO353_03575 0.89 +0.3 764,681 - AO353_03575 0.89 -1.1 764,684 - AO353_03575 0.90 -0.3 764,684 - AO353_03575 0.90 +0.6 764,684 - AO353_03575 0.90 +0.4 764,733 - +0.5 764,733 - -0.6 764,733 - -0.4 764,733 - +0.1 764,733 - -0.4 764,733 - +0.7 764,738 - -0.6 764,738 - -0.7 764,745 - +0.6 764,831 - +0.9 764,851 + -0.1 764,852 - -0.3 764,852 - -0.1 764,882 - +1.7 764,921 - +0.3 764,954 + +0.1 764,954 + -1.2 764,955 - -0.8 764,955 - -1.6 764,997 + AO353_03580 0.12 -1.6 764,999 + AO353_03580 0.12 -1.8 764,999 + AO353_03580 0.12 -0.2 765,198 + AO353_03580 0.31 -1.1 765,198 + AO353_03580 0.31 -1.7 765,199 - AO353_03580 0.31 -1.4 765,205 - AO353_03580 0.31 -0.4 765,205 - AO353_03580 0.31 -0.6 765,274 - AO353_03580 0.38 -0.8 765,376 - AO353_03580 0.47 +0.2 765,548 + AO353_03580 0.64 -1.1 765,836 + -0.2 765,837 - -0.1 765,935 + -0.2 765,936 - +0.8 765,936 - -0.1 766,480 + AO353_03585 0.90 -1.1 766,480 + AO353_03585 0.90 -2.1 766,480 + AO353_03585 0.90 -0.1 766,480 + AO353_03585 0.90 -1.2 766,481 - AO353_03585 0.90 -1.2 766,481 - AO353_03585 0.90 -1.4 766,481 - AO353_03585 0.90 -2.2 766,583 + -0.4 766,654 + -1.8 766,654 + -2.6 766,654 + +0.2 766,655 - +0.1 766,831 + AO353_03590 0.32 -1.8 766,882 - AO353_03590 0.42 -1.1 766,882 - AO353_03590 0.42 +0.0
Or see this region's nucleotide sequence